Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | QEN43_RS08845 | Genome accession | NZ_OX458333 |
| Coordinates | 2081487..2081942 (-) | Length | 151 a.a. |
| NCBI ID | WP_317963978.1 | Uniprot ID | - |
| Organism | Methylocaldum szegediense isolate Msz(Nor) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2076487..2086942
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEN43_RS08830 (MSZNOR_2176) | - | 2077202..2078311 (-) | 1110 | WP_317963975.1 | glycosyltransferase family 4 protein | - |
| QEN43_RS08835 (MSZNOR_2177) | - | 2078352..2079257 (-) | 906 | WP_317963976.1 | glycosyltransferase family 2 protein | - |
| QEN43_RS08840 (MSZNOR_2178) | - | 2079399..2081294 (-) | 1896 | WP_317963977.1 | lipopolysaccharide assembly protein LapB | - |
| QEN43_RS08845 (MSZNOR_2179) | pilE | 2081487..2081942 (-) | 456 | WP_317963978.1 | pilin | Machinery gene |
| QEN43_RS08850 (MSZNOR_2181) | - | 2082742..2083182 (+) | 441 | WP_317963979.1 | DUF29 domain-containing protein | - |
| QEN43_RS08855 (MSZNOR_2182) | - | 2083889..2084440 (-) | 552 | WP_317963980.1 | response regulator transcription factor | - |
| QEN43_RS08860 (MSZNOR_2183) | - | 2084437..2085768 (-) | 1332 | WP_036269259.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 15720.08 Da Isoelectric Point: 6.2748
>NTDB_id=1158462 QEN43_RS08845 WP_317963978.1 2081487..2081942(-) (pilE) [Methylocaldum szegediense isolate Msz(Nor)]
MNANMNMRQQGGFTLIELMIVVAIIGILAAVAIPAYQDYTARAQVAEALNLADGLKATVADIWTDQGSLDNADSTKYGLP
TATDVKGKYVAQVAVENGLITATMEGAGKVAKGVEGKTVVVSPITGAGSVQWRCKAGTIDQKFLPASCRTS
MNANMNMRQQGGFTLIELMIVVAIIGILAAVAIPAYQDYTARAQVAEALNLADGLKATVADIWTDQGSLDNADSTKYGLP
TATDVKGKYVAQVAVENGLITATMEGAGKVAKGVEGKTVVVSPITGAGSVQWRCKAGTIDQKFLPASCRTS
Nucleotide
Download Length: 456 bp
>NTDB_id=1158462 QEN43_RS08845 WP_317963978.1 2081487..2081942(-) (pilE) [Methylocaldum szegediense isolate Msz(Nor)]
ATGAATGCGAATATGAATATGAGGCAGCAAGGTGGTTTTACTTTGATCGAGTTGATGATCGTCGTGGCGATCATCGGTAT
TTTGGCGGCGGTAGCAATTCCGGCTTATCAGGATTACACGGCAAGAGCTCAAGTAGCGGAAGCCCTCAATTTAGCTGACG
GCTTGAAAGCTACAGTTGCGGATATTTGGACCGATCAAGGCAGCTTGGATAATGCCGATAGTACAAAATACGGTCTTCCA
ACTGCTACTGATGTGAAGGGCAAATATGTGGCTCAAGTAGCGGTTGAGAACGGTCTTATCACGGCGACCATGGAAGGAGC
GGGCAAAGTTGCTAAGGGAGTTGAGGGCAAAACAGTTGTAGTAAGTCCAATCACGGGTGCTGGATCGGTGCAGTGGCGGT
GCAAAGCGGGGACTATAGACCAGAAATTCCTCCCGGCCAGCTGCCGCACTAGCTAA
ATGAATGCGAATATGAATATGAGGCAGCAAGGTGGTTTTACTTTGATCGAGTTGATGATCGTCGTGGCGATCATCGGTAT
TTTGGCGGCGGTAGCAATTCCGGCTTATCAGGATTACACGGCAAGAGCTCAAGTAGCGGAAGCCCTCAATTTAGCTGACG
GCTTGAAAGCTACAGTTGCGGATATTTGGACCGATCAAGGCAGCTTGGATAATGCCGATAGTACAAAATACGGTCTTCCA
ACTGCTACTGATGTGAAGGGCAAATATGTGGCTCAAGTAGCGGTTGAGAACGGTCTTATCACGGCGACCATGGAAGGAGC
GGGCAAAGTTGCTAAGGGAGTTGAGGGCAAAACAGTTGTAGTAAGTCCAATCACGGGTGCTGGATCGGTGCAGTGGCGGT
GCAAAGCGGGGACTATAGACCAGAAATTCCTCCCGGCCAGCTGCCGCACTAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria gonorrhoeae MS11 |
46.584 |
100 |
0.497 |
| pilA2 | Legionella pneumophila str. Paris |
50 |
96.689 |
0.483 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
46.154 |
100 |
0.477 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.63 |
96.689 |
0.47 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.361 |
100 |
0.444 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.252 |
100 |
0.424 |
| pilA/pilA1 | Eikenella corrodens VA1 |
40.506 |
100 |
0.424 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
32.258 |
100 |
0.397 |
| pilA | Acinetobacter baumannii strain A118 |
38.776 |
97.351 |
0.377 |
| comP | Acinetobacter baylyi ADP1 |
37.255 |
100 |
0.377 |
| pilA | Pseudomonas aeruginosa PAK |
37.013 |
100 |
0.377 |