Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   KJP45_RS18175 Genome accession   NZ_OX419578
Coordinates   3544080..3544421 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis isolate NRS6128     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3539080..3549421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP45_RS18160 (NRS6128_17980) hepA 3539320..3542088 (+) 2769 WP_033885048.1 DEAD/DEAH box helicase -
  KJP45_RS18165 (NRS6128_17985) ywpJ 3542216..3543073 (-) 858 WP_017696583.1 phosphatase YwpJ -
  KJP45_RS18170 (NRS6128_17990) glcR 3543079..3543855 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  KJP45_RS18175 (NRS6128_17995) ssbB 3544080..3544421 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  KJP45_RS18180 (NRS6128_18000) ywpG 3544498..3544881 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  KJP45_RS18185 (NRS6128_18005) ywpF 3545056..3545466 (+) 411 WP_003227794.1 YwpF-like family protein -
  KJP45_RS18190 (NRS6128_18010) - 3545606..3545998 (-) 393 Protein_3520 class A sortase -
  KJP45_RS18195 - 3545985..3546350 (-) 366 WP_259407082.1 prealbumin-like fold domain-containing protein -
  KJP45_RS18200 (NRS6128_18015) ywpD 3546258..3547094 (+) 837 WP_032722844.1 histidine kinase -
  KJP45_RS18205 (NRS6128_18020) mscL 3547142..3547537 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  KJP45_RS18210 (NRS6128_18025) fabZ 3547610..3548035 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KJP45_RS18215 (NRS6128_18030) rapD 3548227..3549291 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=1157857 KJP45_RS18175 WP_014478203.1 3544080..3544421(-) (ssbB) [Bacillus subtilis isolate NRS6128]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1157857 KJP45_RS18175 WP_014478203.1 3544080..3544421(-) (ssbB) [Bacillus subtilis isolate NRS6128]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGTTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGAGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment