Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   KJP47_RS19545 Genome accession   NZ_OX419577
Coordinates   3671987..3672328 (-) Length   113 a.a.
NCBI ID   WP_017696582.1    Uniprot ID   A0AAX3RQL5
Organism   Bacillus subtilis isolate NRS6120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3666987..3677328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS19530 (NRS6120_20095) hepA 3667229..3669997 (+) 2769 WP_213381842.1 DEAD/DEAH box helicase -
  KJP47_RS19535 (NRS6120_20100) ywpJ 3670123..3670980 (-) 858 WP_213381839.1 Cof-type HAD-IIB family hydrolase -
  KJP47_RS19540 (NRS6120_20105) glcR 3670986..3671762 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  KJP47_RS19545 (NRS6120_20110) ssbB 3671987..3672328 (-) 342 WP_017696582.1 single-stranded DNA-binding protein SsbB Machinery gene
  KJP47_RS19550 (NRS6120_20115) ywpG 3672405..3672788 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  KJP47_RS19555 (NRS6120_20120) ywpF 3672963..3673373 (+) 411 WP_124059305.1 YwpF-like family protein -
  KJP47_RS19560 (NRS6120_20125) - 3673513..3673908 (-) 396 Protein_3794 class A sortase -
  KJP47_RS19565 - 3673895..3674260 (-) 366 WP_348774629.1 prealbumin-like fold domain-containing protein -
  KJP47_RS19570 (NRS6120_20130) ywpD 3674168..3675004 (+) 837 WP_032722844.1 histidine kinase -
  KJP47_RS19575 (NRS6120_20135) mscL 3675052..3675447 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  KJP47_RS19580 (NRS6120_20140) fabZ 3675520..3675945 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KJP47_RS19585 (NRS6120_20145) rapD 3676137..3677201 (+) 1065 WP_041053754.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12461.12 Da        Isoelectric Point: 8.4694

>NTDB_id=1157779 KJP47_RS19545 WP_017696582.1 3671987..3672328(-) (ssbB) [Bacillus subtilis isolate NRS6120]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTQVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1157779 KJP47_RS19545 WP_017696582.1 3671987..3672328(-) (ssbB) [Bacillus subtilis isolate NRS6120]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACACAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

93.805

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

93.805

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.34

93.805

0.416
  ssbA Streptococcus mutans UA159

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae D39

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae R6

43.396

93.805

0.407
  ssbB/cilA Streptococcus mitis SK321

43.396

93.805

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381

Multiple sequence alignment