Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RG26_RS15195 Genome accession   NZ_CP010119
Coordinates   2911464..2911979 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain C3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2906464..2916979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG26_RS15150 (RG26_14310) csrA 2907051..2907236 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  RG26_RS15180 (RG26_14340) yqaB 2908694..2909260 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  RG26_RS15185 (RG26_14345) yqaA 2909257..2909685 (+) 429 WP_001287454.1 YqaA family protein -
  RG26_RS15190 (RG26_14350) gshA 2909758..2911314 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  RG26_RS15195 (RG26_14355) luxS 2911464..2911979 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  RG26_RS15200 (RG26_14360) emrB 2912043..2913581 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  RG26_RS15205 (RG26_14365) emrA 2913598..2914770 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  RG26_RS15210 (RG26_14370) emrR 2914897..2915427 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  RG26_RS15215 (RG26_14375) ygaH 2915518..2915853 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  RG26_RS15220 (RG26_14380) ygaZ 2915843..2916580 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=115289 RG26_RS15195 WP_001130210.1 2911464..2911979(+) (luxS) [Escherichia coli strain C3]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=115289 RG26_RS15195 WP_001130210.1 2911464..2911979(+) (luxS) [Escherichia coli strain C3]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment