Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | MMH06_RS04650 | Genome accession | NZ_OV904788 |
| Coordinates | 880767..881162 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282442.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain RMV7 isolate RMV7domi | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 875767..886162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MMH06_RS04600 (IONPJBJN_00903) | - | 875849..876211 (+) | 363 | WP_000078804.1 | DUF2200 family protein | - |
| MMH06_RS04605 (IONPJBJN_00904) | - | 876208..876711 (+) | 504 | WP_000800942.1 | phosphatase PAP2 family protein | - |
| MMH06_RS04610 (IONPJBJN_00905) | - | 876825..877271 (+) | 447 | WP_000776589.1 | LytTR family DNA-binding domain-containing protein | - |
| MMH06_RS04615 (IONPJBJN_00906) | - | 877276..877950 (+) | 675 | WP_000725707.1 | hypothetical protein | - |
| MMH06_RS11000 | - | 878193..878390 (+) | 198 | Protein_890 | N-acetylmuramoyl-L-alanine amidase family protein | - |
| MMH06_RS10910 | - | 878415..878546 (-) | 132 | WP_001811306.1 | hypothetical protein | - |
| MMH06_RS04630 (IONPJBJN_00907) | - | 878640..878939 (+) | 300 | WP_001815024.1 | DUF4651 domain-containing protein | - |
| MMH06_RS04635 (IONPJBJN_00908) | - | 878936..879253 (+) | 318 | WP_000615767.1 | thioredoxin family protein | - |
| MMH06_RS04640 (IONPJBJN_00909) | ytpR | 879269..879895 (+) | 627 | WP_000578309.1 | YtpR family tRNA-binding protein | - |
| MMH06_RS04645 (IONPJBJN_00910) | - | 879928..880689 (+) | 762 | WP_001107762.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| MMH06_RS04650 (IONPJBJN_00911) | ssbB/cilA | 880767..881162 (+) | 396 | WP_000282442.1 | single-stranded DNA-binding protein | Machinery gene |
| MMH06_RS04655 (IONPJBJN_00912) | groES | 881318..881602 (+) | 285 | WP_000917339.1 | co-chaperone GroES | - |
| MMH06_RS04660 (IONPJBJN_00913) | groL | 881618..883240 (+) | 1623 | WP_000031573.1 | chaperonin GroEL | - |
| MMH06_RS04665 | - | 883378..884133 (+) | 756 | Protein_899 | epoxyqueuosine reductase QueH | - |
| MMH06_RS04670 (IONPJBJN_00915) | - | 884581..885354 (+) | 774 | WP_000566040.1 | class I SAM-dependent methyltransferase | - |
| MMH06_RS04675 (IONPJBJN_00916) | - | 885367..885699 (+) | 333 | WP_001810556.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14907.85 Da Isoelectric Point: 5.9409
>NTDB_id=1152102 MMH06_RS04650 WP_000282442.1 880767..881162(+) (ssbB/cilA) [Streptococcus pneumoniae strain RMV7 isolate RMV7domi]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1152102 MMH06_RS04650 WP_000282442.1 880767..881162(+) (ssbB/cilA) [Streptococcus pneumoniae strain RMV7 isolate RMV7domi]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
100 |
100 |
1 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis SK321 |
99.237 |
100 |
0.992 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
97.71 |
100 |
0.977 |
| ssbA | Streptococcus mutans UA159 |
75.573 |
100 |
0.756 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
70.992 |
100 |
0.71 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.714 |
85.496 |
0.519 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.887 |
80.916 |
0.42 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
47.788 |
86.26 |
0.412 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
44.444 |
82.443 |
0.366 |