Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VTAP4600_RS15590 Genome accession   NZ_LT960611
Coordinates   3470899..3471996 (+) Length   365 a.a.
NCBI ID   WP_102523624.1    Uniprot ID   A0A2N8ZH92
Organism   Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3465899..3476996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VTAP4600_RS15570 (VTAP4600_A3306) rsmB 3466837..3468123 (-) 1287 WP_102523621.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  VTAP4600_RS15575 (VTAP4600_A3307) fmt 3468204..3469151 (-) 948 WP_102523622.1 methionyl-tRNA formyltransferase -
  VTAP4600_RS15580 (VTAP4600_A3308) def 3469165..3469677 (-) 513 WP_231897818.1 peptide deformylase -
  VTAP4600_RS15585 (VTAP4600_A3309) - 3469794..3470894 (+) 1101 WP_102523623.1 LysM peptidoglycan-binding domain-containing protein -
  VTAP4600_RS15590 (VTAP4600_A3310) dprA 3470899..3471996 (+) 1098 WP_102523624.1 DNA-processing protein DprA Machinery gene
  VTAP4600_RS15595 (VTAP4600_A3311) - 3471999..3472472 (+) 474 WP_102523625.1 DUF494 family protein -
  VTAP4600_RS15600 (VTAP4600_A3312) - 3472512..3473105 (+) 594 WP_102523626.1 type I DNA topoisomerase -
  VTAP4600_RS15605 (VTAP4600_A3313) - 3473135..3474022 (-) 888 WP_102523627.1 LysR family transcriptional regulator -
  VTAP4600_RS15610 (VTAP4600_A3314) - 3474179..3474577 (+) 399 WP_102523628.1 RidA family protein -
  VTAP4600_RS15615 (VTAP4600_A3315) - 3474661..3476121 (+) 1461 WP_102523629.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39119.62 Da        Isoelectric Point: 6.6648

>NTDB_id=1148327 VTAP4600_RS15590 WP_102523624.1 3470899..3471996(+) (dprA) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MSDQELSAWLILTNTPKIGAVALGRLLAFDSAVNIVGSDEERLQSFGLTAPQISHIRKAHHEKVDACLEWQMHDSHHIVT
LLDDAYPNLLKQVSSPPPVIFVKGDIASLSNPQIAMVGSRNASVDGLRHATNFAYALAESGLIVTSGLALGIDGHAHNGA
LQSGKTIAVLGSGLDCIYPARHKKLASRIIEQGALVSEFHPETKPHPTHFPRRNRIISGLSVGVFVVEAAQRSGSLITAR
YAAEQGRDVFALPSSIDSPNSNGGNGLIKSGACLVLTPQDIIDEVETLVSWSLSQQTTIFTSETEQEALPFPKLMANVGQ
QATPVDILAQRTHIPVHEVMMQLLELELSGRVAAVPGGYIRKGRG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1148327 VTAP4600_RS15590 WP_102523624.1 3470899..3471996(+) (dprA) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGTCCGATCAAGAGCTATCGGCTTGGCTAATACTCACTAACACCCCGAAAATAGGGGCTGTGGCATTGGGCCGTTTACT
GGCATTTGATAGTGCAGTGAATATTGTTGGATCCGATGAAGAGCGTCTGCAGTCTTTTGGACTCACGGCCCCACAAATCT
CTCACATTCGTAAAGCTCATCATGAAAAAGTGGACGCTTGTTTAGAGTGGCAAATGCATGACAGCCACCATATCGTAACC
TTATTGGATGACGCATACCCTAATCTTCTAAAACAAGTATCGTCACCTCCTCCTGTCATCTTTGTGAAAGGTGATATTGC
ATCACTTTCAAATCCCCAAATAGCCATGGTAGGAAGTAGAAATGCCAGTGTTGATGGGCTTCGACATGCGACCAATTTTG
CCTACGCATTGGCGGAAAGTGGGTTGATCGTAACCAGTGGCTTAGCATTGGGCATTGATGGTCATGCTCATAACGGTGCG
TTGCAAAGTGGCAAAACGATAGCGGTGCTAGGTTCAGGTTTGGATTGTATTTACCCGGCTCGTCATAAGAAATTAGCCAG
TCGTATTATCGAACAAGGCGCGTTGGTTTCAGAGTTTCATCCAGAAACAAAGCCTCACCCGACTCATTTTCCGCGGCGAA
ACAGAATTATCAGTGGCTTATCCGTAGGCGTATTTGTGGTTGAAGCGGCGCAACGAAGTGGATCATTAATAACGGCTCGT
TACGCAGCAGAGCAAGGGCGAGATGTGTTTGCACTACCCAGCTCAATCGATTCGCCAAATAGCAATGGTGGTAATGGTTT
AATTAAGTCTGGTGCCTGCTTAGTTTTGACCCCGCAAGACATTATTGATGAAGTAGAAACGTTGGTTTCATGGTCACTAT
CGCAACAAACAACTATATTTACATCAGAGACCGAGCAAGAAGCATTGCCATTTCCAAAACTAATGGCTAACGTAGGACAA
CAAGCAACACCCGTTGATATTCTTGCACAGCGGACCCATATACCTGTGCATGAAGTCATGATGCAACTGCTCGAGTTAGA
ACTCTCGGGTCGCGTTGCTGCAGTACCTGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-276)

DprA winged helix domain (DprA_WH)

(313-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8ZH92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.295

100

0.625
  dprA Vibrio cholerae strain A1552

55.256

100

0.562
  dprA Glaesserella parasuis strain SC1401

45.455

100

0.466
  dprA Neisseria meningitidis MC58

38.889

100

0.422
  dprA Neisseria meningitidis strain C311

38.889

100

0.422
  dprA Neisseria gonorrhoeae MS11

38.5

100

0.422
  dprA Neisseria gonorrhoeae strain FA1090

38

100

0.416
  dprA Haemophilus influenzae Rd KW20

43.658

92.877

0.405
  dprA Acinetobacter baylyi ADP1

39.295

100

0.397
  dprA Acinetobacter baumannii D1279779

39.071

100

0.392
  dprA Acinetobacter baumannii strain A118

39.071

100

0.392
  dprA Legionella pneumophila strain ERS1305867

44.237

87.945

0.389

Multiple sequence alignment