Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CFBP1590_RS04965 Genome accession   NZ_LT855380
Coordinates   1026678..1027895 (-) Length   405 a.a.
NCBI ID   WP_088234578.1    Uniprot ID   A0A1Y6JID3
Organism   Pseudomonas viridiflava strain CFBP 1590 isolate E12-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1021678..1032895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP1590_RS04930 (CFBP1590__1039) - 1022665..1022838 (-) 174 WP_004884089.1 DUF3094 family protein -
  CFBP1590_RS04935 (CFBP1590__1040) - 1022852..1023397 (-) 546 WP_088234575.1 MOSC domain-containing protein -
  CFBP1590_RS04940 (CFBP1590__1041) - 1023394..1024023 (-) 630 WP_004884092.1 DUF1780 domain-containing protein -
  CFBP1590_RS04945 (CFBP1590__1042) - 1024148..1024609 (+) 462 WP_057409622.1 hypothetical protein -
  CFBP1590_RS04950 (CFBP1590__1043) yacG 1024978..1025187 (-) 210 WP_088234576.1 DNA gyrase inhibitor YacG -
  CFBP1590_RS04955 (CFBP1590__1044) coaE 1025184..1025807 (-) 624 WP_025993968.1 dephospho-CoA kinase -
  CFBP1590_RS04960 (CFBP1590__1045) pilD 1025804..1026676 (-) 873 WP_088234577.1 A24 family peptidase Machinery gene
  CFBP1590_RS04965 (CFBP1590__1046) pilC 1026678..1027895 (-) 1218 WP_088234578.1 type II secretion system F family protein Machinery gene
  CFBP1590_RS04970 (CFBP1590__1047) pilB 1027898..1029598 (-) 1701 WP_029243836.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFBP1590_RS04975 (CFBP1590__1048) pilA2 1029823..1030260 (+) 438 WP_025993964.1 pilin Machinery gene
  CFBP1590_RS04980 (CFBP1590__1049) - 1030783..1031505 (-) 723 Protein_962 IS66 family transposase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43916.70 Da        Isoelectric Point: 10.2256

>NTDB_id=1146527 CFBP1590_RS04965 WP_088234578.1 1026678..1027895(-) (pilC) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
MASKAVKVSVFTWEGVDKKGSKISGELSGHNPALIKAQLRKQGVNPTKVRKKTVSIFGKGKKIKPLDIAFFARQMATMMK
AGVPLLQSFDIISEGAENPNMRSLVDSLKQEVSAGNSFATALRQKPDQFDNLFCNLVDAGEQAGALESLLDRVATYKEKT
EKLKAKIKKAMTYPAAVLVVAFIVSGILLIKVVPQFQAVFAGFGAELPAFTRLVIGLSEVVQTWWLAIIGIFVGSFFIFK
RSYKQSQKFRDSVDRFLLKIPLIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVMKIKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMALLGVIVGGLVIAMYLPIFQ
LGGAV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1146527 CFBP1590_RS04965 WP_088234578.1 1026678..1027895(-) (pilC) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
ATGGCCAGTAAAGCAGTCAAAGTCAGTGTTTTCACCTGGGAAGGCGTAGACAAGAAAGGCAGCAAGATCAGCGGCGAGTT
GAGTGGCCACAATCCGGCGCTGATCAAGGCTCAACTTCGTAAGCAGGGCGTCAACCCGACCAAAGTGCGGAAGAAGACAG
TCTCGATTTTCGGCAAGGGTAAAAAGATCAAGCCGCTGGACATCGCGTTTTTTGCCCGGCAGATGGCGACCATGATGAAA
GCGGGCGTTCCGCTGTTGCAGTCTTTCGACATTATCAGCGAGGGCGCGGAGAACCCGAACATGCGCTCGCTTGTGGACTC
TCTTAAACAGGAAGTATCCGCTGGTAATAGTTTTGCAACGGCGTTGAGGCAAAAGCCCGACCAATTCGACAATTTATTCT
GCAATCTGGTGGACGCAGGCGAACAGGCAGGTGCTCTTGAAAGCTTGTTGGACCGGGTAGCGACTTATAAGGAAAAAACC
GAAAAGCTCAAAGCCAAGATCAAGAAGGCCATGACTTATCCCGCCGCAGTTCTGGTTGTGGCGTTTATCGTCTCCGGGAT
TCTGCTCATCAAAGTGGTGCCACAATTTCAGGCGGTTTTTGCCGGTTTTGGGGCCGAGTTACCTGCTTTTACACGATTGG
TCATCGGTCTTTCCGAAGTGGTCCAAACCTGGTGGCTGGCCATTATCGGGATATTCGTCGGCAGCTTTTTCATATTCAAG
CGAAGCTACAAACAGTCACAGAAATTTCGCGACAGTGTTGACAGGTTTCTGTTGAAGATTCCGCTGATTGGTCCTTTGAT
CTTCAAGTCGTCAGTCGCTCGCTACGCTCGCACGCTGGCTACGACCTTTGCGGCGGGTGTTCCCTTGGTCGAAGCACTGG
ATTCCGTGGCAGGGGCTACAGGTAATGTCGTGTTCAGAAATGCAGTGATGAAAATCAAGCAAGATGTGTCCACGGGGATG
CAGCTGAATTTCTCAATGCGCTCCACAGGGGTATTTCCAAGCCTTGCTATCCAGATGACCGCCATCGGTGAAGAGTCTGG
TGCCCTGGATAGCATGCTCGATAAGGTCGCGACCTATTACGAAGATGAAGTCGACAACATGGTCGACAGCCTGACCAGCT
TGATGGAGCCGATGATCATGGCCCTGCTCGGCGTTATCGTCGGAGGGCTGGTCATTGCCATGTACCTGCCGATTTTCCAG
TTGGGAGGTGCGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y6JID3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.321

100

0.743
  pilC Acinetobacter baumannii D1279779

60.644

99.753

0.605
  pilC Acinetobacter baylyi ADP1

59.804

100

0.602
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

42.079

99.753

0.42
  pilG Neisseria meningitidis 44/76-A

42.079

99.753

0.42
  pilC Vibrio campbellii strain DS40M4

40.541

100

0.407
  pilC Vibrio cholerae strain A1552

40.399

99.012

0.4
  pilC Thermus thermophilus HB27

38.272

100

0.383

Multiple sequence alignment