Detailed information NTG1146526

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CFBP1590_RS04960
• Genome accession: NZ_LT855380
• Coordinates: 1025804..1026676 (-)
• Length: 290 a.a.
• NCBI ID: WP_088234577.1
• Uniprot ID: A0A1Y6JHT4
• Organism: Pseudomonas viridiflava strain CFBP 1590 isolate E12-5
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1020804..1031676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFBP1590_RS04925 (CFBP1590__1038)	-	1021303..1022601 (-)	1299	WP_088234574.1	NAD(P)/FAD-dependent oxidoreductase	-
CFBP1590_RS04930 (CFBP1590__1039)	-	1022665..1022838 (-)	174	WP_004884089.1	DUF3094 family protein	-
CFBP1590_RS04935 (CFBP1590__1040)	-	1022852..1023397 (-)	546	WP_088234575.1	MOSC domain-containing protein	-
CFBP1590_RS04940 (CFBP1590__1041)	-	1023394..1024023 (-)	630	WP_004884092.1	DUF1780 domain-containing protein	-
CFBP1590_RS04945 (CFBP1590__1042)	-	1024148..1024609 (+)	462	WP_057409622.1	hypothetical protein	-
CFBP1590_RS04950 (CFBP1590__1043)	yacG	1024978..1025187 (-)	210	WP_088234576.1	DNA gyrase inhibitor YacG	-
CFBP1590_RS04955 (CFBP1590__1044)	coaE	1025184..1025807 (-)	624	WP_025993968.1	dephospho-CoA kinase	-
CFBP1590_RS04960 (CFBP1590__1045)	pilD	1025804..1026676 (-)	873	WP_088234577.1	A24 family peptidase	Machinery gene
CFBP1590_RS04965 (CFBP1590__1046)	pilC	1026678..1027895 (-)	1218	WP_088234578.1	type II secretion system F family protein	Machinery gene
CFBP1590_RS04970 (CFBP1590__1047)	pilB	1027898..1029598 (-)	1701	WP_029243836.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CFBP1590_RS04975 (CFBP1590__1048)	pilA2	1029823..1030260 (+)	438	WP_025993964.1	pilin	Machinery gene
CFBP1590_RS04980 (CFBP1590__1049)	-	1030783..1031505 (-)	723	Protein_962	IS66 family transposase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31967.13 Da
• Isoelectric Point: 7.2387

>NTDB_id=1146526 CFBP1590_RS04960 WP_088234577.1 1025804..1026676(-) (pilD) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
MPLLDFLASSTLAFVIFIGVLGLLIGSFLNVVVYRLPKMMENDWKAQSREMLGLPAEPEQPTFNLILPHSRCPHCAHQIR
PWENLPVVSYLMLGGKCSQCKAPISKRYPLVELVCALLSAYVAWHFGFGWQTAAMLVLSWGLLAMSLIDADTQLLPDSLV
LPLMWLGLIVNAFGLFTSLNDALWGAVAGYLSLWSVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMMRLRNVESGTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1146526 CFBP1590_RS04960 WP_088234577.1 1025804..1026676(-) (pilD) [Pseudomonas viridiflava strain CFBP 1590 isolate E12-5]
ATGCCCCTCCTCGACTTCCTGGCCAGCTCAACGCTGGCCTTCGTTATTTTCATCGGCGTACTCGGCCTCCTGATCGGAAG
CTTCCTCAACGTCGTGGTCTACCGCTTACCCAAAATGATGGAGAACGACTGGAAAGCCCAGTCTCGTGAAATGCTCGGCC
TGCCCGCCGAGCCTGAACAGCCCACCTTCAACCTGATCCTCCCCCACTCCCGCTGCCCCCACTGCGCGCATCAGATCCGT
CCTTGGGAAAACCTGCCGGTAGTCAGCTACCTGATGCTTGGCGGCAAGTGTTCGCAATGCAAGGCTCCGATCAGCAAGCG
CTATCCGCTGGTCGAGCTGGTCTGTGCGTTGTTGTCGGCCTATGTGGCCTGGCATTTCGGCTTTGGTTGGCAGACGGCGG
CAATGCTGGTGCTGAGCTGGGGCTTGCTGGCGATGAGCCTTATAGACGCCGACACCCAGCTGCTGCCGGACTCACTCGTA
TTGCCGTTGATGTGGCTGGGCCTGATCGTTAACGCATTTGGTCTGTTCACTTCGTTAAACGACGCTTTGTGGGGGGCCGT
GGCGGGGTATCTGTCGTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAACTGCTGGCCATGCTCGGGGCGTGGGGCGGCTGGCAGATCCTCCCGCTGACGATCCTGCTGTCATCGCTGGTGGGG
GCCATTCTTGGCGTGATCATGATGCGATTGCGCAATGTCGAATCCGGTACTCCGATCCCCTTCGGTCCTTATCTGGCCAT
CGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

3D structure

• AlphaFold DB: A0A1Y6JHT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	54.579	94.138	0.514
pilD	Vibrio cholerae strain A1552	54.579	94.138	0.514
pilD	Acinetobacter baumannii D1279779	51.916	98.966	0.514
pilD	Acinetobacter nosocomialis M2	51.22	98.966	0.507
pilD	Neisseria gonorrhoeae MS11	52.362	87.586	0.459