Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D5R51_RS00310 Genome accession   NZ_LS997867
Coordinates   64154..65269 (+) Length   371 a.a.
NCBI ID   WP_119090698.1    Uniprot ID   -
Organism   Vibrio paracholerae strain NCTC 30     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 59154..70269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS00290 (SAMEA104470976_00061) rsmB 60077..61357 (-) 1281 WP_071192592.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  D5R51_RS00295 (SAMEA104470976_00062) fmt 61413..62360 (-) 948 WP_019829590.1 methionyl-tRNA formyltransferase -
  D5R51_RS00300 (SAMEA104470976_00063) def 62378..62887 (-) 510 WP_119090696.1 peptide deformylase -
  D5R51_RS00305 (SAMEA104470976_00064) - 63027..64154 (+) 1128 WP_162891862.1 LysM peptidoglycan-binding domain-containing protein -
  D5R51_RS00310 (SAMEA104470976_00065) dprA 64154..65269 (+) 1116 WP_119090698.1 DNA-processing protein DprA Machinery gene
  D5R51_RS00315 (SAMEA104470976_00066) - 65272..65748 (+) 477 WP_000979770.1 DUF494 family protein -
  D5R51_RS00320 (SAMEA104470976_00067) - 65753..66318 (+) 566 Protein_62 type I DNA topoisomerase -
  D5R51_RS00325 (SAMEA104470976_00068) - 66392..67525 (-) 1134 WP_119090699.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  D5R51_RS00330 (SAMEA104470976_00069) purE 67529..67969 (-) 441 WP_119090700.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  D5R51_RS00335 (SAMEA104470976_00070) - 68181..68738 (+) 558 WP_057644946.1 L-threonylcarbamoyladenylate synthase -
  D5R51_RS00340 (SAMEA104470976_00071) hemF 68757..69674 (+) 918 WP_119090701.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39987.98 Da        Isoelectric Point: 7.1952

>NTDB_id=1143323 D5R51_RS00310 WP_119090698.1 64154..65269(+) (dprA) [Vibrio paracholerae strain NCTC 30]
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLASGLKPEQLVFLTTQAAKQAEQCLQWRSAANNRYIV
TPHCPLYPRLLKEISSSPPILFIEGIWEAVHDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIIAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALIWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=1143323 D5R51_RS00310 WP_119090698.1 64154..65269(+) (dprA) [Vibrio paracholerae strain NCTC 30]
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGTAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACCACTCAAGCGGCTAAGCAAGCCGAGCAGTGTTTGCAATGGCGCTCAGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCTCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCATCCTGTTTATCGAAGGAATATG
GGAAGCGGTGCATGACCCTGCGGTGGCTATCGTCGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGTCAGT
TTGCCACTGAGCTCGCGCAGTCGGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATAGACGGCTATGCGCACGATGGA
GCTTTGCAAGCACAAGGGCAAACCGTAGCAGTATTAGGCTCAGGGCTGGCGCAGGTTTACCCTAAACAGCATCAAGGGTT
AGCGGAGCGAATCATTGCTCAAGGTGCCTTGGTTTCTGAGTTTGCCCCTCACACACCTCCTAAAGCGGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGTTTATCGCTGGGTGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACC
GCACGCTACGCCGCTGAGCAAGGGCGTGAGGTTTTTGTGGTTCCCGGATCGATTTTTAATGCCGCCAGCCAAGGTAGCAA
TCAATTGATTCGCCAAGGCGCTTGCTTGGTACAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGATTTGGT
CACTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTGCAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGCCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

98.652

100

0.987
  dprA Vibrio campbellii strain DS40M4

58.108

99.73

0.58
  dprA Glaesserella parasuis strain SC1401

43.617

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.583

100

0.439
  dprA Neisseria meningitidis MC58

37.594

100

0.404
  dprA Neisseria meningitidis strain C311

37.594

100

0.404
  dprA Haemophilus influenzae Rd KW20

44.745

89.757

0.402
  dprA Neisseria gonorrhoeae strain FA1090

36.409

100

0.394
  dprA Acinetobacter baumannii D1279779

43.807

89.218

0.391
  dprA Acinetobacter baumannii strain A118

43.505

89.218

0.388
  dprA Neisseria gonorrhoeae MS11

35.589

100

0.383
  dprA Acinetobacter baylyi ADP1

42.042

89.757

0.377

Multiple sequence alignment