Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DQN84_RS18765 Genome accession   NZ_LS483476
Coordinates   3888000..3888350 (-) Length   116 a.a.
NCBI ID   WP_066144068.1    Uniprot ID   A0A2X4WDZ6
Organism   Lederbergia lenta strain NCTC4824     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3883000..3893350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN84_RS18750 (NCTC4824_03851) - 3884477..3887293 (+) 2817 WP_066144078.1 DEAD/DEAH box helicase -
  DQN84_RS18755 (NCTC4824_03852) - 3887328..3887702 (+) 375 WP_066144074.1 hypothetical protein -
  DQN84_RS18760 (NCTC4824_03853) - 3887781..3887978 (-) 198 WP_066144071.1 hypothetical protein -
  DQN84_RS18765 (NCTC4824_03854) ssbB 3888000..3888350 (-) 351 WP_066144068.1 single-stranded DNA-binding protein Machinery gene
  DQN84_RS18770 (NCTC4824_03855) - 3888579..3889004 (+) 426 WP_066144065.1 YwpF-like family protein -
  DQN84_RS18775 (NCTC4824_03856) - 3889037..3889354 (-) 318 WP_066144062.1 hypothetical protein -
  DQN84_RS18780 (NCTC4824_03857) fabZ 3889673..3890098 (-) 426 WP_066144059.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DQN84_RS18785 (NCTC4824_03858) - 3890158..3890445 (-) 288 WP_066144056.1 DNA-directed RNA polymerase subunit beta -
  DQN84_RS18790 (NCTC4824_03859) - 3890565..3891404 (-) 840 WP_066144053.1 flagellar hook-basal body protein -
  DQN84_RS18795 (NCTC4824_03860) - 3891441..3892217 (-) 777 WP_066144049.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12988.91 Da        Isoelectric Point: 8.4722

>NTDB_id=1142461 DQN84_RS18765 WP_066144068.1 3888000..3888350(-) (ssbB) [Lederbergia lenta strain NCTC4824]
MINQVTLVGRMTKNPELRYTVEGKAVLNITLALNRHYRNSQGEIDADFVLCTLWNKTAENTAKFCEKGSIIGVIGKIQTR
NYEDPNGKKVYITEVVADSVKFMGGRPAEEKEAQPI

Nucleotide


Download         Length: 351 bp        

>NTDB_id=1142461 DQN84_RS18765 WP_066144068.1 3888000..3888350(-) (ssbB) [Lederbergia lenta strain NCTC4824]
ATGATAAATCAAGTAACACTTGTCGGTAGAATGACGAAAAATCCCGAACTCCGGTATACAGTGGAAGGAAAGGCAGTATT
AAATATCACATTAGCCTTGAATCGCCACTATCGTAATAGCCAAGGAGAGATCGATGCTGATTTTGTCTTATGTACTTTAT
GGAATAAGACTGCGGAAAACACAGCGAAGTTTTGTGAAAAAGGTTCCATTATTGGAGTCATTGGTAAAATTCAAACGAGA
AATTATGAAGATCCAAATGGGAAGAAGGTGTATATTACAGAAGTCGTTGCGGATTCAGTCAAATTTATGGGTGGCCGACC
TGCAGAAGAAAAAGAAGCACAACCAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X4WDZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.909

94.828

0.578
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.34

88.793

0.491
  ssb Latilactobacillus sakei subsp. sakei 23K

48.649

95.69

0.466
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.056

92.241

0.388
  ssbB/cilA Streptococcus mitis NCTC 12261

42.056

92.241

0.388
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

90.517

0.388
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.509

91.379

0.379
  ssbB/cilA Streptococcus pneumoniae R6

41.121

92.241

0.379
  ssbB/cilA Streptococcus mitis SK321

41.121

92.241

0.379
  ssbB/cilA Streptococcus pneumoniae D39

41.121

92.241

0.379
  ssbB/cilA Streptococcus pneumoniae Rx1

41.121

92.241

0.379
  ssbA Streptococcus mutans UA159

39.623

91.379

0.362

Multiple sequence alignment