Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   DQL01_RS10620 Genome accession   NZ_LS483451
Coordinates   1970907..1971311 (-) Length   134 a.a.
NCBI ID   WP_000588022.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1965907..1976311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS10585 rnpA 1966322..1966693 (-) 372 WP_000739241.1 ribonuclease P protein component -
  DQL01_RS10590 - 1966841..1968031 (-) 1191 WP_000167766.1 acetate kinase -
  DQL01_RS10595 comYH 1968082..1969035 (-) 954 WP_000345119.1 class I SAM-dependent methyltransferase Machinery gene
  DQL01_RS10600 - 1969096..1969690 (-) 595 Protein_1996 class I SAM-dependent methyltransferase -
  DQL01_RS10605 comGG/cglG 1969827..1970240 (-) 414 WP_050114148.1 competence type IV pilus minor pilin ComGG Machinery gene
  DQL01_RS10610 comGF/cglF 1970218..1970679 (-) 462 WP_050114150.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL01_RS10615 comGE/cglE 1970642..1970944 (-) 303 WP_188109891.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQL01_RS10620 comGD/cglD 1970907..1971311 (-) 405 WP_000588022.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL01_RS10625 comGC/cglC 1971304..1971630 (-) 327 WP_000738634.1 comG operon protein ComGC Machinery gene
  DQL01_RS10630 comGB/cglB 1971632..1972648 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL01_RS10635 comGA/cglA/cilD 1972596..1973537 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL01_RS10640 - 1973613..1973978 (-) 366 WP_000286415.1 DUF1033 family protein -
  DQL01_RS10645 - 1974129..1975187 (-) 1059 WP_000649466.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14696.86 Da        Isoelectric Point: 10.0319

>NTDB_id=1142093 DQL01_RS10620 WP_000588022.1 1970907..1971311(-) (comGD/cglD) [Streptococcus pneumoniae strain 4041STDY6836166]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSDQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1142093 DQL01_RS10620 WP_000588022.1 1970907..1971311(-) (comGD/cglD) [Streptococcus pneumoniae strain 4041STDY6836166]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTCTTGTGAGTATCCTTGCCTTGGGCTTATCCGGCTC
TGTCCAGTCCACTTTTGCAGCAGTAGAGGAGCAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCCCCATCAGATCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

97.761

100

0.978
  comGD/cglD Streptococcus pneumoniae Rx1

97.015

100

0.97
  comGD/cglD Streptococcus pneumoniae D39

97.015

100

0.97
  comGD/cglD Streptococcus pneumoniae R6

97.015

100

0.97
  comGD/cglD Streptococcus mitis SK321

96.269

100

0.963
  comGD/cglD Streptococcus mitis NCTC 12261

96.992

99.254

0.963
  comYD Streptococcus gordonii str. Challis substr. CH1

58.268

94.776

0.552
  comYD Streptococcus mutans UA140

49.219

95.522

0.47
  comYD Streptococcus mutans UA159

49.219

95.522

0.47

Multiple sequence alignment