Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   DQL01_RS10605 Genome accession   NZ_LS483451
Coordinates   1969827..1970240 (-) Length   137 a.a.
NCBI ID   WP_050114148.1    Uniprot ID   A0A4J1TDX6
Organism   Streptococcus pneumoniae strain 4041STDY6836166     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1964827..1975240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL01_RS10580 - 1965523..1966347 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  DQL01_RS10585 rnpA 1966322..1966693 (-) 372 WP_000739241.1 ribonuclease P protein component -
  DQL01_RS10590 - 1966841..1968031 (-) 1191 WP_000167766.1 acetate kinase -
  DQL01_RS10595 comYH 1968082..1969035 (-) 954 WP_000345119.1 class I SAM-dependent methyltransferase Machinery gene
  DQL01_RS10600 - 1969096..1969690 (-) 595 Protein_1996 class I SAM-dependent methyltransferase -
  DQL01_RS10605 comGG/cglG 1969827..1970240 (-) 414 WP_050114148.1 competence type IV pilus minor pilin ComGG Machinery gene
  DQL01_RS10610 comGF/cglF 1970218..1970679 (-) 462 WP_050114150.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL01_RS10615 comGE/cglE 1970642..1970944 (-) 303 WP_188109891.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQL01_RS10620 comGD/cglD 1970907..1971311 (-) 405 WP_000588022.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL01_RS10625 comGC/cglC 1971304..1971630 (-) 327 WP_000738634.1 comG operon protein ComGC Machinery gene
  DQL01_RS10630 comGB/cglB 1971632..1972648 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL01_RS10635 comGA/cglA/cilD 1972596..1973537 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL01_RS10640 - 1973613..1973978 (-) 366 WP_000286415.1 DUF1033 family protein -
  DQL01_RS10645 - 1974129..1975187 (-) 1059 WP_000649466.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15985.45 Da        Isoelectric Point: 10.2472

>NTDB_id=1142090 DQL01_RS10605 WP_050114148.1 1969827..1970240(-) (comGG/cglG) [Streptococcus pneumoniae strain 4041STDY6836166]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMTKRTKDKVEQESGEQVFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1142090 DQL01_RS10605 WP_050114148.1 1969827..1970240(-) (comGG/cglG) [Streptococcus pneumoniae strain 4041STDY6836166]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGACTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A4J1TDX6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

98.54

100

0.985

  comGG/cglG Streptococcus pneumoniae D39

98.54

100

0.985

  comGG/cglG Streptococcus pneumoniae R6

98.54

100

0.985

  comGG/cglG Streptococcus pneumoniae TIGR4

98.54

100

0.985

  comGG/cglG Streptococcus mitis SK321

86.861

100

0.869

  comGG/cglG Streptococcus mitis NCTC 12261

88.43

88.321

0.781

  comYG Streptococcus mutans UA140

38.06

97.81

0.372

  comYG Streptococcus mutans UA159

38.06

97.81

0.372


Multiple sequence alignment