Detailed information NTG1141998

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: DQL12_RS09830
• Genome accession: NZ_LS483450
• Coordinates: 1820343..1820738 (-)
• Length: 131 a.a.
• NCBI ID: WP_050255706.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 4041STDY6583227
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1815343..1825738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQL12_RS09805	-	1815569..1816102 (+)	534	WP_000775321.1	DUF402 domain-containing protein	-
DQL12_RS09810	-	1816456..1816662 (-)	207	WP_000775827.1	transcriptional regulator	-
DQL12_RS09815	-	1816841..1818052 (+)	1212	WP_111695781.1	ISL3 family transposase	-
DQL12_RS09820	groL	1818151..1819773 (-)	1623	WP_000031585.1	chaperonin GroEL	-
DQL12_RS09825	groES	1819789..1820073 (-)	285	WP_000917330.1	co-chaperone GroES	-
DQL12_RS09830	ssbB/cilA	1820343..1820738 (-)	396	WP_050255706.1	single-stranded DNA-binding protein	Machinery gene
DQL12_RS09835	-	1820816..1821577 (-)	762	WP_001107758.1	SDR family NAD(P)-dependent oxidoreductase	-
DQL12_RS09840	ytpR	1821610..1822239 (-)	630	WP_050255705.1	YtpR family tRNA-binding protein	-
DQL12_RS09845	-	1822255..1822572 (-)	318	WP_000615767.1	thioredoxin family protein	-
DQL12_RS09850	-	1822569..1822868 (-)	300	WP_001013974.1	DUF4651 domain-containing protein	-
DQL12_RS09860	-	1823066..1823263 (-)	198	Protein_1834	N-acetylmuramoyl-L-alanine amidase family protein	-
DQL12_RS09865	-	1823505..1824179 (-)	675	WP_000725749.1	LiaF transmembrane domain-containing protein	-
DQL12_RS09870	-	1824185..1824631 (-)	447	WP_050255704.1	LytTR family DNA-binding domain-containing protein	-
DQL12_RS09875	-	1824745..1825248 (-)	504	WP_000800947.1	phosphatase PAP2 family protein	-
DQL12_RS09880	-	1825245..1825607 (-)	363	WP_000078805.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14941.87 Da
• Isoelectric Point: 5.9409

>NTDB_id=1141998 DQL12_RS09830 WP_050255706.1 1820343..1820738(-) (ssbB/cilA) [Streptococcus pneumoniae strain 4041STDY6583227]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQFLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1141998 DQL12_RS09830 WP_050255706.1 1820343..1820738(-) (ssbB/cilA) [Streptococcus pneumoniae strain 4041STDY6583227]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTCACAGGATTCCAATTCTTGGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae Rx1	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae D39	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae R6	98.473	100	0.985
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	96.947	100	0.969
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	52.83	80.916	0.427
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405
ssbB	Bacillus subtilis subsp. subtilis str. 168	45.37	82.443	0.374