Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DQL20_RS01380 Genome accession   NZ_LS483444
Coordinates   229608..230003 (+) Length   131 a.a.
NCBI ID   WP_006595118.1    Uniprot ID   A0A4Z1DVM0
Organism   Streptococcus australis strain NCTC13166     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 224608..235003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL20_RS01350 (NCTC11371_00269) - 225271..226755 (-) 1485 WP_006595123.1 DUF1846 domain-containing protein -
  DQL20_RS01355 (NCTC11371_00270) pepA 226914..227978 (-) 1065 WP_006595122.1 glutamyl aminopeptidase -
  DQL20_RS01360 (NCTC11371_00271) - 228125..228415 (+) 291 WP_006595121.1 DUF4651 domain-containing protein -
  DQL20_RS01365 (NCTC11371_00272) - 228412..228729 (+) 318 WP_006595120.1 thioredoxin family protein -
  DQL20_RS01370 (NCTC11371_00273) ytpR 228744..229370 (+) 627 WP_006595119.1 YtpR family tRNA-binding protein -
  DQL20_RS01380 (NCTC11371_00274) ssbB/cilA 229608..230003 (+) 396 WP_006595118.1 single-stranded DNA-binding protein Machinery gene
  DQL20_RS01385 (NCTC11371_00275) - 230223..231209 (+) 987 WP_006595117.1 substrate-binding domain-containing protein -
  DQL20_RS11020 - 231876..231989 (-) 114 Protein_231 hypothetical protein -
  DQL20_RS11025 - 231944..232528 (+) 585 WP_350019127.1 sensor histidine kinase -
  DQL20_RS01395 (NCTC11371_00277) - 232525..233211 (+) 687 WP_006595115.1 response regulator transcription factor -
  DQL20_RS01400 (NCTC11371_00278) - 233208..234515 (+) 1308 WP_006595114.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14677.65 Da        Isoelectric Point: 5.9328

>NTDB_id=1141718 DQL20_RS01380 WP_006595118.1 229608..230003(+) (ssbB/cilA) [Streptococcus australis strain NCTC13166]
MYNKVILIGRLVADPELHKTSTDKSVARATLAVNRRYKDQNGEREADFITLVVWGKLAETLVSYANKGSLLSVDGELRTR
RYEKNGTTQYVTEVLCQGFQLLESRAQRAMRANGAGGDLADLILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1141718 DQL20_RS01380 WP_006595118.1 229608..230003(+) (ssbB/cilA) [Streptococcus australis strain NCTC13166]
ATGTACAATAAAGTAATTTTAATCGGGCGCCTTGTGGCTGACCCGGAGCTTCATAAGACCAGTACGGATAAGTCCGTTGC
GCGTGCGACCCTGGCTGTCAATCGGCGTTACAAGGATCAAAATGGCGAGCGTGAGGCGGACTTTATCACCCTAGTGGTCT
GGGGGAAATTAGCAGAGACCCTTGTATCCTATGCCAACAAGGGGAGCTTGCTCTCAGTAGATGGCGAGCTTCGAACCAGA
CGTTATGAGAAGAATGGGACGACCCAATATGTGACAGAAGTGCTCTGTCAAGGATTCCAGCTCTTAGAAAGTCGCGCTCA
ACGAGCGATGCGGGCTAATGGAGCAGGAGGAGATTTAGCGGATCTGATCCTCGAAGAGGAAGAGCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z1DVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

81.679

100

0.817
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae Rx1

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae D39

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

80.916

100

0.809
  ssbB/cilA Streptococcus mitis SK321

80.916

100

0.809
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.909

83.969

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

48.214

85.496

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment