Detailed information
Bioinformatically predicted
Overview
| Name | comGC/cglC | Type | Machinery gene |
| Locus tag | DQN33_RS00830 | Genome accession | NZ_LS483408 |
| Coordinates | 133683..134006 (+) | Length | 107 a.a. |
| NCBI ID | WP_046388917.1 | Uniprot ID | - |
| Organism | Streptococcus uberis strain NCTC4674 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 128683..139006
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN33_RS00815 (NCTC4674_00166) | - | 131337..131702 (+) | 366 | WP_041817508.1 | DUF1033 family protein | - |
| DQN33_RS00820 (NCTC4674_00167) | comGA/cglA | 131775..132716 (+) | 942 | WP_012657673.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQN33_RS00825 (NCTC4674_00168) | comYB | 132834..133682 (+) | 849 | WP_331813062.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQN33_RS00830 (NCTC4674_00169) | comGC/cglC | 133683..134006 (+) | 324 | WP_046388917.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQN33_RS00835 (NCTC4674_00170) | comGD | 133960..134397 (+) | 438 | WP_052733618.1 | competence type IV pilus minor pilin ComGD | - |
| DQN33_RS00840 (NCTC4674_00171) | comGE | 134369..134668 (+) | 300 | WP_052733619.1 | competence type IV pilus minor pilin ComGE | - |
| DQN33_RS00845 (NCTC4674_00172) | comGF | 134628..135083 (+) | 456 | WP_046388919.1 | competence type IV pilus minor pilin ComGF | - |
| DQN33_RS00850 (NCTC4674_00173) | comGG | 135061..135420 (+) | 360 | WP_111672967.1 | competence type IV pilus minor pilin ComGG | - |
| DQN33_RS00855 (NCTC4674_00174) | comYH | 135465..136421 (+) | 957 | WP_111672968.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQN33_RS00860 (NCTC4674_00175) | - | 136477..137667 (+) | 1191 | WP_012657681.1 | acetate kinase | - |
| DQN33_RS00865 (NCTC4674_00176) | - | 137785..137988 (+) | 204 | WP_012657682.1 | helix-turn-helix transcriptional regulator | - |
| DQN33_RS00870 | - | 137990..138442 (+) | 453 | WP_111672969.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 12299.48 Da Isoelectric Point: 10.0527
>NTDB_id=1140487 DQN33_RS00830 WP_046388917.1 133683..134006(+) (comGC/cglC) [Streptococcus uberis strain NCTC4674]
MKKWMKTLENKKAKAFTLLEMLMVLLIISVLMLLFIPNLSKQKEKVTDKGNAAVVKIVENQAELYELNEGKKPSLSELEK
NGNITKNQVEAYNDYFKKHPTESRNVS
MKKWMKTLENKKAKAFTLLEMLMVLLIISVLMLLFIPNLSKQKEKVTDKGNAAVVKIVENQAELYELNEGKKPSLSELEK
NGNITKNQVEAYNDYFKKHPTESRNVS
Nucleotide
Download Length: 324 bp
>NTDB_id=1140487 DQN33_RS00830 WP_046388917.1 133683..134006(+) (comGC/cglC) [Streptococcus uberis strain NCTC4674]
ATGAAAAAATGGATGAAAACTTTAGAAAACAAGAAGGCAAAAGCTTTCACACTTTTAGAAATGCTAATGGTCCTTCTGAT
CATCAGCGTGCTCATGCTCCTATTTATTCCCAATTTAAGCAAACAAAAAGAAAAGGTAACAGATAAAGGAAACGCTGCAG
TTGTGAAAATTGTAGAAAATCAAGCAGAGCTCTATGAATTGAATGAAGGGAAAAAACCTAGCTTAAGTGAGCTAGAGAAA
AATGGTAATATCACAAAAAATCAAGTAGAGGCTTATAATGACTACTTTAAAAAACATCCAACAGAATCTCGCAATGTATC
ATAG
ATGAAAAAATGGATGAAAACTTTAGAAAACAAGAAGGCAAAAGCTTTCACACTTTTAGAAATGCTAATGGTCCTTCTGAT
CATCAGCGTGCTCATGCTCCTATTTATTCCCAATTTAAGCAAACAAAAAGAAAAGGTAACAGATAAAGGAAACGCTGCAG
TTGTGAAAATTGTAGAAAATCAAGCAGAGCTCTATGAATTGAATGAAGGGAAAAAACCTAGCTTAAGTGAGCTAGAGAAA
AATGGTAATATCACAAAAAATCAAGTAGAGGCTTATAATGACTACTTTAAAAAACATCCAACAGAATCTCGCAATGTATC
ATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC/cglC | Streptococcus mitis SK321 |
60.377 |
99.065 |
0.598 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
58.491 |
99.065 |
0.579 |
| comGC/cglC | Streptococcus pneumoniae D39 |
58.491 |
99.065 |
0.579 |
| comGC/cglC | Streptococcus pneumoniae R6 |
58.491 |
99.065 |
0.579 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
57.944 |
100 |
0.579 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
61.386 |
94.393 |
0.579 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
58.654 |
97.196 |
0.57 |
| comYC | Streptococcus mutans UA159 |
56.311 |
96.262 |
0.542 |
| comYC | Streptococcus mutans UA140 |
56.311 |
96.262 |
0.542 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
57.426 |
94.393 |
0.542 |
| comYC | Streptococcus suis isolate S10 |
53.409 |
82.243 |
0.439 |