Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DQN33_RS00855 | Genome accession | NZ_LS483408 |
| Coordinates | 135465..136421 (+) | Length | 318 a.a. |
| NCBI ID | WP_111672968.1 | Uniprot ID | - |
| Organism | Streptococcus uberis strain NCTC4674 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 130465..141421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN33_RS00815 (NCTC4674_00166) | - | 131337..131702 (+) | 366 | WP_041817508.1 | DUF1033 family protein | - |
| DQN33_RS00820 (NCTC4674_00167) | comGA/cglA | 131775..132716 (+) | 942 | WP_012657673.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQN33_RS00825 (NCTC4674_00168) | comYB | 132834..133682 (+) | 849 | WP_331813062.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQN33_RS00830 (NCTC4674_00169) | comGC/cglC | 133683..134006 (+) | 324 | WP_046388917.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQN33_RS00835 (NCTC4674_00170) | comGD | 133960..134397 (+) | 438 | WP_052733618.1 | competence type IV pilus minor pilin ComGD | - |
| DQN33_RS00840 (NCTC4674_00171) | comGE | 134369..134668 (+) | 300 | WP_052733619.1 | competence type IV pilus minor pilin ComGE | - |
| DQN33_RS00845 (NCTC4674_00172) | comGF | 134628..135083 (+) | 456 | WP_046388919.1 | competence type IV pilus minor pilin ComGF | - |
| DQN33_RS00850 (NCTC4674_00173) | comGG | 135061..135420 (+) | 360 | WP_111672967.1 | competence type IV pilus minor pilin ComGG | - |
| DQN33_RS00855 (NCTC4674_00174) | comYH | 135465..136421 (+) | 957 | WP_111672968.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQN33_RS00860 (NCTC4674_00175) | - | 136477..137667 (+) | 1191 | WP_012657681.1 | acetate kinase | - |
| DQN33_RS00865 (NCTC4674_00176) | - | 137785..137988 (+) | 204 | WP_012657682.1 | helix-turn-helix transcriptional regulator | - |
| DQN33_RS00870 | - | 137990..138442 (+) | 453 | WP_111672969.1 | hypothetical protein | - |
| DQN33_RS00875 (NCTC4674_00178) | - | 138451..139104 (+) | 654 | WP_111672970.1 | CPBP family intramembrane glutamic endopeptidase | - |
| DQN33_RS00880 (NCTC4674_00179) | proC | 139131..139901 (-) | 771 | WP_111672971.1 | pyrroline-5-carboxylate reductase | - |
| DQN33_RS00885 (NCTC4674_00180) | pepA | 139923..140987 (-) | 1065 | WP_111673599.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 36038.05 Da Isoelectric Point: 4.6583
>NTDB_id=1140488 DQN33_RS00855 WP_111672968.1 135465..136421(+) (comYH) [Streptococcus uberis strain NCTC4674]
MNFEKIEKAYELILENAQLIENDLKTHIYDALIEQNSFYLGSPGASDHVVKNNEALAALSLSKEEWRRAFQFVFIKAGQT
EQLQANHQFTPDSIAFILLFLLEELSSNDTLDILEIGSGIGNLAQTLLNNSKKSLDYLGIELDDLLIDLSASIAEIIGSS
ARFIQEDAVRPQILKESDVIISDLPVGYYPNDDIARRYQVASPKEHTYAHHLLMEQSLKYLKQGGYALFLVPSNLLTSQQ
SDLLKKWLTDYAQVMALVTLPETLFGHPSNAKSILVLQKKAEKVGETFVYPLTDLQNPENIRYFMTEFKKWKQDNVFS
MNFEKIEKAYELILENAQLIENDLKTHIYDALIEQNSFYLGSPGASDHVVKNNEALAALSLSKEEWRRAFQFVFIKAGQT
EQLQANHQFTPDSIAFILLFLLEELSSNDTLDILEIGSGIGNLAQTLLNNSKKSLDYLGIELDDLLIDLSASIAEIIGSS
ARFIQEDAVRPQILKESDVIISDLPVGYYPNDDIARRYQVASPKEHTYAHHLLMEQSLKYLKQGGYALFLVPSNLLTSQQ
SDLLKKWLTDYAQVMALVTLPETLFGHPSNAKSILVLQKKAEKVGETFVYPLTDLQNPENIRYFMTEFKKWKQDNVFS
Nucleotide
Download Length: 957 bp
>NTDB_id=1140488 DQN33_RS00855 WP_111672968.1 135465..136421(+) (comYH) [Streptococcus uberis strain NCTC4674]
ATGAACTTTGAAAAAATTGAAAAAGCTTACGAGCTAATATTGGAAAATGCCCAATTAATTGAAAATGATTTAAAAACTCA
CATTTATGATGCCCTAATCGAGCAAAATTCTTTTTATTTAGGTAGCCCAGGTGCTAGTGACCATGTTGTAAAAAACAATG
AAGCGTTAGCCGCCTTGTCTTTAAGCAAGGAAGAATGGCGGAGAGCCTTTCAGTTTGTCTTCATTAAAGCTGGTCAGACG
GAACAATTACAAGCCAACCATCAGTTTACTCCTGACAGTATTGCCTTTATTCTCTTATTTTTGTTAGAAGAATTGAGTTC
AAATGATACCTTGGATATTCTAGAAATTGGAAGTGGTATTGGAAACTTAGCCCAAACTCTCCTAAACAATAGCAAGAAAT
CATTGGATTATCTAGGGATTGAATTGGATGATTTGTTGATTGATTTATCCGCAAGTATTGCTGAGATTATAGGATCTTCA
GCACGTTTTATTCAAGAAGATGCTGTGCGACCTCAAATCTTAAAAGAAAGTGATGTGATCATCAGTGATTTGCCAGTGGG
CTATTACCCGAATGATGACATAGCAAGACGCTACCAAGTGGCCAGTCCAAAGGAGCACACTTATGCCCATCATTTATTGA
TGGAACAGTCATTGAAATACCTTAAACAAGGTGGCTATGCTCTATTCTTGGTACCAAGTAATTTACTGACAAGCCAGCAA
AGTGATTTGTTAAAAAAATGGTTGACAGATTATGCGCAGGTCATGGCTCTTGTTACTTTGCCTGAAACTCTTTTTGGGCA
TCCTTCAAATGCAAAATCGATTTTAGTTCTCCAAAAGAAAGCTGAAAAAGTGGGTGAAACCTTTGTTTATCCTCTAACTG
ATCTTCAAAATCCAGAAAACATTCGTTATTTCATGACAGAATTTAAAAAGTGGAAACAAGATAATGTTTTTTCATAA
ATGAACTTTGAAAAAATTGAAAAAGCTTACGAGCTAATATTGGAAAATGCCCAATTAATTGAAAATGATTTAAAAACTCA
CATTTATGATGCCCTAATCGAGCAAAATTCTTTTTATTTAGGTAGCCCAGGTGCTAGTGACCATGTTGTAAAAAACAATG
AAGCGTTAGCCGCCTTGTCTTTAAGCAAGGAAGAATGGCGGAGAGCCTTTCAGTTTGTCTTCATTAAAGCTGGTCAGACG
GAACAATTACAAGCCAACCATCAGTTTACTCCTGACAGTATTGCCTTTATTCTCTTATTTTTGTTAGAAGAATTGAGTTC
AAATGATACCTTGGATATTCTAGAAATTGGAAGTGGTATTGGAAACTTAGCCCAAACTCTCCTAAACAATAGCAAGAAAT
CATTGGATTATCTAGGGATTGAATTGGATGATTTGTTGATTGATTTATCCGCAAGTATTGCTGAGATTATAGGATCTTCA
GCACGTTTTATTCAAGAAGATGCTGTGCGACCTCAAATCTTAAAAGAAAGTGATGTGATCATCAGTGATTTGCCAGTGGG
CTATTACCCGAATGATGACATAGCAAGACGCTACCAAGTGGCCAGTCCAAAGGAGCACACTTATGCCCATCATTTATTGA
TGGAACAGTCATTGAAATACCTTAAACAAGGTGGCTATGCTCTATTCTTGGTACCAAGTAATTTACTGACAAGCCAGCAA
AGTGATTTGTTAAAAAAATGGTTGACAGATTATGCGCAGGTCATGGCTCTTGTTACTTTGCCTGAAACTCTTTTTGGGCA
TCCTTCAAATGCAAAATCGATTTTAGTTCTCCAAAAGAAAGCTGAAAAAGTGGGTGAAACCTTTGTTTATCCTCTAACTG
ATCTTCAAAATCCAGAAAACATTCGTTATTTCATGACAGAATTTAAAAAGTGGAAACAAGATAATGTTTTTTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
66.877 |
99.686 |
0.667 |
| comYH | Streptococcus mutans UA159 |
66.562 |
99.686 |
0.664 |