Detailed information NTG1139655

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DQM63_RS10545
• Genome accession: NZ_LS483385
• Coordinates: 2114930..2115364 (-)
• Length: 144 a.a.
• NCBI ID: WP_002901717.1
• Uniprot ID: -
• Organism: Streptococcus sanguinis strain NCTC7863
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2109930..2120364

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM63_RS10510 (NCTC7863_02074)	-	2109963..2110601 (-)	639	WP_002901701.1	hypothetical protein	-
DQM63_RS10515 (NCTC7863_02075)	-	2110719..2111468 (-)	750	WP_032909647.1	CPBP family intramembrane glutamic endopeptidase	-
DQM63_RS10520 (NCTC7863_02076)	-	2111603..2112796 (-)	1194	WP_002901705.1	acetate kinase	-
DQM63_RS10525 (NCTC7863_02077)	comYH	2112833..2113798 (-)	966	WP_002901707.1	class I SAM-dependent methyltransferase	Machinery gene
DQM63_RS10530 (NCTC7863_02078)	comGG	2113880..2114269 (-)	390	WP_002901710.1	competence type IV pilus minor pilin ComGG	-
DQM63_RS10535 (NCTC7863_02079)	comGF/cglF	2114250..2114687 (-)	438	WP_002901713.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQM63_RS10540 (NCTC7863_02080)	comGE/cglE	2114671..2114964 (-)	294	WP_002914478.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQM63_RS10545 (NCTC7863_02081)	comYD	2114930..2115364 (-)	435	WP_002901717.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQM63_RS10550 (NCTC7863_02082)	comYC	2115324..2115641 (-)	318	WP_002896769.1	competence type IV pilus major pilin ComGC	Machinery gene
DQM63_RS10555 (NCTC7863_02083)	comYB	2115641..2116675 (-)	1035	WP_263281106.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQM63_RS10560 (NCTC7863_02084)	comYA	2116605..2117546 (-)	942	WP_002901721.1	competence type IV pilus ATPase ComGA	Machinery gene
DQM63_RS10565 (NCTC7863_02085)	-	2117676..2118056 (-)	381	WP_002901723.1	DUF1033 family protein	-
DQM63_RS10575 (NCTC7863_02086)	-	2118375..2119481 (-)	1107	WP_002901727.1	glycosyl hydrolase family 8	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16354.78 Da
• Isoelectric Point: 9.3997

>NTDB_id=1139655 DQM63_RS10545 WP_002901717.1 2114930..2115364(-) (comYD) [Streptococcus sanguinis strain NCTC7863]
MENTVAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSVAGHEKLSLKISGR
QISNGYQELDFPQTLQEHEQQVILFDRAGGNSSLSKITFQTEDRTVVYQLYMGNGKFKKTTASS

Nucleotide

• Length: 435 bp

>NTDB_id=1139655 DQM63_RS10545 WP_002901717.1 2114930..2115364(-) (comYD) [Streptococcus sanguinis strain NCTC7863]
ATGGAAAACACAGTGGCGAAACTCAAGCGGTTGCCAATTAAGGCTTTTACACTGCTGGAAAGTCTCCTCGTTCTTTTTGT
TGTGAGTTTTCTCTTACTGGGCTTATCTGGCTCGGTGAGGGCTGGCTTCAATCAGGTTCAAGAGCAACTCTTCTTTTTAG
AGTTTGAGAGGCTCTACCAGGAGACGCAGAGACTGAGCGTAGCCGGTCATGAGAAGCTTTCTCTGAAGATTTCGGGACGG
CAGATTTCCAATGGCTATCAAGAGCTGGACTTTCCACAAACTTTGCAGGAACATGAGCAGCAGGTCATTCTGTTTGACCG
GGCTGGCGGGAATTCATCACTCAGCAAAATTACTTTTCAGACGGAGGACAGGACAGTTGTTTACCAGCTTTATATGGGAA
ATGGCAAGTTTAAAAAGACAACGGCTTCAAGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	60.284	97.917	0.59
comGD/cglD	Streptococcus mitis NCTC 12261	59.091	91.667	0.542
comGD/cglD	Streptococcus pneumoniae Rx1	59.843	88.194	0.528
comGD/cglD	Streptococcus pneumoniae D39	59.843	88.194	0.528
comGD/cglD	Streptococcus pneumoniae R6	59.843	88.194	0.528
comGD/cglD	Streptococcus mitis SK321	59.843	88.194	0.528
comGD/cglD	Streptococcus pneumoniae TIGR4	59.055	88.194	0.521
comYD	Streptococcus mutans UA140	49.612	89.583	0.444
comYD	Streptococcus mutans UA159	49.612	89.583	0.444
comGD	Lactococcus lactis subsp. cremoris KW2	41.221	90.972	0.375