Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DQM97_RS09840 Genome accession   NZ_LS483378
Coordinates   2011443..2011838 (-) Length   131 a.a.
NCBI ID   WP_002962590.1    Uniprot ID   U2IJE4
Organism   Streptococcus sobrinus strain NCTC12279     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2006443..2016838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM97_RS09815 - 2006601..2006843 (+) 243 WP_282705102.1 hypothetical protein -
  DQM97_RS11090 - 2006840..2006947 (+) 108 WP_282705101.1 hypothetical protein -
  DQM97_RS09820 (NCTC12279_01976) groL 2007204..2008829 (-) 1626 WP_019772051.1 chaperonin GroEL -
  DQM97_RS09825 (NCTC12279_01977) groES 2009048..2009332 (-) 285 WP_002961824.1 co-chaperone GroES -
  DQM97_RS09830 (NCTC12279_01978) - 2009813..2010607 (-) 795 WP_028798435.1 Cof-type HAD-IIB family hydrolase -
  DQM97_RS09840 (NCTC12279_01980) ssbB 2011443..2011838 (-) 396 WP_002962590.1 single-stranded DNA-binding protein Machinery gene
  DQM97_RS09845 (NCTC12279_01981) ytpR 2011951..2012577 (-) 627 WP_004205742.1 YtpR family tRNA-binding protein -
  DQM97_RS09850 (NCTC12279_01982) - 2012599..2012916 (-) 318 WP_004205745.1 thioredoxin family protein -
  DQM97_RS09855 (NCTC12279_01983) - 2012909..2013199 (-) 291 WP_004205748.1 DUF4651 domain-containing protein -
  DQM97_RS09860 (NCTC12279_01984) pepA 2013468..2014535 (+) 1068 WP_004205750.1 glutamyl aminopeptidase -
  DQM97_RS09865 (NCTC12279_01985) proC 2014597..2015367 (+) 771 WP_004205752.1 pyrroline-5-carboxylate reductase -
  DQM97_RS09870 (NCTC12279_01986) - 2015745..2016500 (-) 756 WP_004205755.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14768.70 Da        Isoelectric Point: 6.2395

>NTDB_id=1139245 DQM97_RS09840 WP_002962590.1 2011443..2011838(-) (ssbB) [Streptococcus sobrinus strain NCTC12279]
MYNKVILIGRLTAAPEMVKTPSNKSVTHITLAVNRRFKTQDGERQADFVNVVFWGKLAESLVSYAGKGSLVSLDGEIRTR
HYEKDGQTHYVTEILAQSFQLLESRAQRALRENNGASDLTDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1139245 DQM97_RS09840 WP_002962590.1 2011443..2011838(-) (ssbB) [Streptococcus sobrinus strain NCTC12279]
ATGTATAACAAAGTCATTCTTATCGGTCGTTTGACAGCAGCTCCCGAGATGGTTAAAACACCCTCGAATAAATCTGTTAC
TCACATTACTCTAGCGGTTAATCGCCGTTTTAAAACTCAGGATGGCGAGCGGCAGGCTGACTTTGTCAATGTTGTTTTCT
GGGGCAAGTTGGCTGAAAGCCTAGTTTCTTATGCCGGCAAGGGCAGTTTGGTTTCCTTAGATGGGGAAATTAGAACCCGC
CACTACGAAAAGGATGGCCAGACCCACTATGTAACTGAAATCCTAGCCCAGTCCTTCCAGCTGCTAGAAAGCCGTGCCCA
ACGTGCCCTGAGGGAAAACAATGGAGCCAGTGACCTAACCGACCTAGTCCTCGAAGAAGAGGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2IJE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

100

100

1
  ssbA Streptococcus mutans UA159

78.626

100

0.786
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

45.763

90.076

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment