Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   DQM54_RS09560 Genome accession   NZ_LS483375
Coordinates   1932928..1933245 (-) Length   105 a.a.
NCBI ID   WP_012130940.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1927928..1938245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS09525 (NCTC3165_01894) - 1928507..1929172 (-) 666 WP_111724177.1 CPBP family intramembrane glutamic endopeptidase -
  DQM54_RS09530 (NCTC3165_01895) - 1929218..1930408 (-) 1191 WP_045634156.1 acetate kinase -
  DQM54_RS09535 (NCTC3165_01896) comYH 1930458..1931411 (-) 954 WP_111724178.1 class I SAM-dependent methyltransferase Machinery gene
  DQM54_RS09540 (NCTC3165_01897) comGG 1931442..1931870 (-) 429 WP_111724318.1 competence type IV pilus minor pilin ComGG -
  DQM54_RS09545 (NCTC3165_01898) comGF/cglF 1931854..1932291 (-) 438 WP_111724179.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM54_RS09550 (NCTC3165_01899) comGE/cglE 1932275..1932568 (-) 294 WP_111724180.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQM54_RS09555 (NCTC3165_01900) comYD 1932540..1932968 (-) 429 WP_012130939.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQM54_RS09560 (NCTC3165_01901) comYC 1932928..1933245 (-) 318 WP_012130940.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM54_RS09565 (NCTC3165_01902) comYB 1933242..1934276 (-) 1035 WP_111724181.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM54_RS09570 (NCTC3165_01903) comYA 1934209..1935147 (-) 939 WP_111724182.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM54_RS09575 (NCTC3165_01904) - 1935250..1935618 (-) 369 WP_046164737.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11461.38 Da        Isoelectric Point: 9.9223

>NTDB_id=1139150 DQM54_RS09560 WP_012130940.1 1932928..1933245(-) (comYC) [Streptococcus gordonii strain NCTC3165]
MNKLKKLRVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVSDTGNAAVVKVVESQAELYELKNTGDQATLSKLVAAGN
ISQKQADSYKAYYGKNNSETQAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1139150 DQM54_RS09560 WP_012130940.1 1932928..1933245(-) (comYC) [Streptococcus gordonii strain NCTC3165]
ATGAACAAATTAAAAAAATTACGTGTGAAAGCCTTTACTTTAGTGGAAATGCTAGTTGTCCTTCTGATCATCAGTGTTCT
GATGCTCTTATTTGTCCCTAATTTAACCAAGCAAAAAGAGGCTGTTTCGGATACTGGAAATGCTGCGGTGGTTAAGGTAG
TTGAGAGCCAGGCTGAGCTCTATGAACTCAAAAATACAGGAGATCAAGCAACCCTTAGCAAACTAGTCGCAGCTGGGAAC
ATTAGTCAAAAGCAAGCAGACTCTTACAAGGCTTATTATGGTAAGAACAATAGTGAGACTCAGGCAGTTGCCAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

100

100

1
  comYC Streptococcus mutans UA140

71.429

100

0.714
  comYC Streptococcus mutans UA159

71.429

100

0.714
  comGC/cglC Streptococcus mitis NCTC 12261

69.524

100

0.695
  comGC/cglC Streptococcus mitis SK321

68.932

98.095

0.676
  comGC/cglC Streptococcus pneumoniae Rx1

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae D39

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae TIGR4

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae R6

67.961

98.095

0.667
  comGC Lactococcus lactis subsp. cremoris KW2

59.794

92.381

0.552
  comYC Streptococcus suis isolate S10

61.798

84.762

0.524

Multiple sequence alignment