Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DQM54_RS09535 Genome accession   NZ_LS483375
Coordinates   1930458..1931411 (-) Length   317 a.a.
NCBI ID   WP_111724178.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC3165     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1925458..1936411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM54_RS09515 (NCTC3165_01892) - 1926129..1927460 (-) 1332 WP_231872510.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  DQM54_RS09520 (NCTC3165_01893) folP 1927465..1928430 (-) 966 WP_111724176.1 dihydropteroate synthase -
  DQM54_RS09525 (NCTC3165_01894) - 1928507..1929172 (-) 666 WP_111724177.1 CPBP family intramembrane glutamic endopeptidase -
  DQM54_RS09530 (NCTC3165_01895) - 1929218..1930408 (-) 1191 WP_045634156.1 acetate kinase -
  DQM54_RS09535 (NCTC3165_01896) comYH 1930458..1931411 (-) 954 WP_111724178.1 class I SAM-dependent methyltransferase Machinery gene
  DQM54_RS09540 (NCTC3165_01897) comGG 1931442..1931870 (-) 429 WP_111724318.1 competence type IV pilus minor pilin ComGG -
  DQM54_RS09545 (NCTC3165_01898) comGF/cglF 1931854..1932291 (-) 438 WP_111724179.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM54_RS09550 (NCTC3165_01899) comGE/cglE 1932275..1932568 (-) 294 WP_111724180.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQM54_RS09555 (NCTC3165_01900) comYD 1932540..1932968 (-) 429 WP_012130939.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQM54_RS09560 (NCTC3165_01901) comYC 1932928..1933245 (-) 318 WP_012130940.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM54_RS09565 (NCTC3165_01902) comYB 1933242..1934276 (-) 1035 WP_111724181.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM54_RS09570 (NCTC3165_01903) comYA 1934209..1935147 (-) 939 WP_111724182.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM54_RS09575 (NCTC3165_01904) - 1935250..1935618 (-) 369 WP_046164737.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36056.27 Da        Isoelectric Point: 4.8739

>NTDB_id=1139146 DQM54_RS09535 WP_111724178.1 1930458..1931411(-) (comYH) [Streptococcus gordonii strain NCTC3165]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQMDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSQKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASVSQAKTVFVLQKQKNIKAEPFVYALADLQNHEEITRFRESFQKWRKVSEN

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1139146 DQM54_RS09535 WP_111724178.1 1930458..1931411(-) (comYH) [Streptococcus gordonii strain NCTC3165]
ATGAATTTTGAAAAAATTGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATCGAGCAAAACGGTATCTATTTGGATGGGCAAATGGACTTAGAAATTGTCAAAAAAAATCATC
AGACCTTGAAGAGCTTAAAGCTAAGCAGAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAACCTTTGCAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGAAGTGGAACTGGAAATCTTGCAGAGACAATCCTGAACAATAGTCAGAAGG
AGATTGATTATCTAGGATTAGAAATCGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGTTCAAAG
GCACATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATCAGCGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTATCAGGTAGCCAGTCAGACAGAGCACACCTATGCTCATCATCTGTTGA
TGGAGCAGGCATTAAAGTATTTAAAGGTTGATGGCTATGCGATCTTCTTAGCTCCTAATCATCTCTTAACCAGCCCGCAG
AGCGACTTGCTTAAATCCTGGCTCAAAGACAATGCCAGCTTAGTAGCAATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGTTTCTCAGGCTAAGACGGTGTTTGTTTTGCAAAAACAAAAAAATATAAAAGCTGAGCCTTTTGTCTATGCATTAGCAG
ATCTACAAAATCATGAAGAAATTACTCGCTTCCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

59.105

98.738

0.584
  comYH Streptococcus mutans UA140

59.105

98.738

0.584

Multiple sequence alignment