Detailed information NTG1139144

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: DQM54_RS09455
• Genome accession: NZ_LS483375
• Coordinates: 1918082..1918477 (+)
• Length: 131 a.a.
• NCBI ID: WP_046164720.1
• Uniprot ID: A0A0F5MM81
• Organism: Streptococcus gordonii strain NCTC3165
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1913082..1923477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM54_RS09430 (NCTC3165_01876)	-	1914291..1915277 (-)	987	WP_111724165.1	sugar ABC transporter substrate-binding protein	-
DQM54_RS09435 (NCTC3165_01877)	pepA	1915526..1916593 (-)	1068	WP_045504464.1	glutamyl aminopeptidase	-
DQM54_RS09440 (NCTC3165_01878)	-	1916774..1917058 (+)	285	WP_111724166.1	DUF4651 domain-containing protein	-
DQM54_RS09445 (NCTC3165_01879)	-	1917058..1917375 (+)	318	WP_111724167.1	thioredoxin family protein	-
DQM54_RS09450 (NCTC3165_01880)	ytpR	1917392..1918018 (+)	627	WP_060553813.1	YtpR family tRNA-binding protein	-
DQM54_RS09455 (NCTC3165_01881)	ssbB/cilA	1918082..1918477 (+)	396	WP_046164720.1	single-stranded DNA-binding protein	Machinery gene
DQM54_RS09460 (NCTC3165_01882)	-	1918658..1920142 (+)	1485	WP_048777252.1	DUF1846 domain-containing protein	-
DQM54_RS09465 (NCTC3165_01883)	-	1920198..1920632 (-)	435	WP_045773424.1	hypothetical protein	-
DQM54_RS09470 (NCTC3165_01884)	-	1920642..1920806 (-)	165	WP_111724168.1	hypothetical protein	-
DQM54_RS09475 (NCTC3165_01885)	-	1920803..1921006 (-)	204	WP_002896748.1	helix-turn-helix transcriptional regulator	-
DQM54_RS09485 (NCTC3165_01886)	-	1921303..1922340 (-)	1038	WP_111724169.1	sensor histidine kinase	-
DQM54_RS09490 (NCTC3165_01887)	-	1922307..1923005 (-)	699	WP_111724170.1	response regulator transcription factor	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14776.67 Da
• Isoelectric Point: 6.2467

>NTDB_id=1139144 DQM54_RS09455 WP_046164720.1 1918082..1918477(+) (ssbB/cilA) [Streptococcus gordonii strain NCTC3165]
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRFKDQNGEREADFINIVLWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1139144 DQM54_RS09455 WP_046164720.1 1918082..1918477(+) (ssbB/cilA) [Streptococcus gordonii strain NCTC3165]
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACAATTGCTGTTAACCGTCGTTTTAAGGATCAAAACGGTGAACGCGAAGCAGACTTTATCAATATTGTCCTTT
GGGGCAAATTGGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTGATCTCTCTGGACGGCGAACTACGGACCCGT
CGTTATGAAAAAGACGGTGTGACTCACTATGTCACAGAAGTGCTTGGTCATGGTTTCCAACTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGGGCTGATTTAGCCGATCTAGTCTTGGAAGAAGAGGAACTTCCTTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-100)

3D structure

• AlphaFold DB: A0A0F5MM81

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus mitis NCTC 12261	83.969	100	0.84
ssbB/cilA	Streptococcus pneumoniae Rx1	83.969	100	0.84
ssbB/cilA	Streptococcus pneumoniae D39	83.969	100	0.84
ssbB/cilA	Streptococcus pneumoniae R6	83.969	100	0.84
ssbB/cilA	Streptococcus pneumoniae TIGR4	83.969	100	0.84
ssbB/cilA	Streptococcus mitis SK321	83.206	100	0.832
ssbA	Streptococcus mutans UA159	81.679	100	0.817
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.756
ssbB	Lactococcus lactis subsp. cremoris KW2	63.393	85.496	0.542
ssb	Latilactobacillus sakei subsp. sakei 23K	50.943	80.916	0.412
ssbA	Bacillus subtilis subsp. subtilis str. 168	50	80.916	0.405
ssbB	Bacillus subtilis subsp. subtilis str. 168	45.37	82.443	0.374