Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DQM55_RS10625 Genome accession   NZ_LS483364
Coordinates   2141525..2141920 (-) Length   131 a.a.
NCBI ID   WP_002903597.1    Uniprot ID   A0A2X3YS32
Organism   Streptococcus sanguinis strain NCTC11086     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2136525..2146920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS10605 (NCTC11086_02149) - 2136989..2138272 (-) 1284 WP_111676705.1 ABC transporter substrate-binding protein -
  DQM55_RS10610 (NCTC11086_02150) - 2138269..2138952 (-) 684 WP_002896732.1 response regulator transcription factor -
  DQM55_RS10615 (NCTC11086_02151) - 2138945..2140258 (-) 1314 WP_111676707.1 sensor histidine kinase -
  DQM55_RS10620 (NCTC11086_02152) - 2140258..2141244 (-) 987 WP_111676709.1 substrate-binding domain-containing protein -
  DQM55_RS10625 (NCTC11086_02153) ssbB/cilA 2141525..2141920 (-) 396 WP_002903597.1 single-stranded DNA-binding protein Machinery gene
  DQM55_RS10630 (NCTC11086_02154) - 2142050..2142637 (+) 588 WP_002911087.1 hypothetical protein -
  DQM55_RS10640 (NCTC11086_02156) ytpR 2143136..2143762 (-) 627 WP_002903477.1 YtpR family tRNA-binding protein -
  DQM55_RS10645 (NCTC11086_02157) - 2143759..2144094 (-) 336 WP_002903478.1 thioredoxin family protein -
  DQM55_RS10650 (NCTC11086_02158) - 2144091..2144378 (-) 288 WP_002903480.1 DUF4651 domain-containing protein -
  DQM55_RS10655 (NCTC11086_02159) pepA 2144549..2145613 (+) 1065 WP_111676713.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14741.66 Da        Isoelectric Point: 6.7246

>NTDB_id=1138689 DQM55_RS10625 WP_002903597.1 2141525..2141920(-) (ssbB/cilA) [Streptococcus sanguinis strain NCTC11086]
MYNKVIVIGRLTAMPELHKTANEKSVARATVAVNRRYKSQSGEREADFVNVVVWGRLAETLASYASKGSLISLDGELRTR
RYEKEGATHYVTEVLCHSFQLLESRAQRALRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1138689 DQM55_RS10625 WP_002903597.1 2141525..2141920(-) (ssbB/cilA) [Streptococcus sanguinis strain NCTC11086]
ATGTATAATAAAGTAATTGTAATCGGCCGGCTGACGGCTATGCCTGAACTGCACAAGACTGCGAATGAAAAATCTGTGGC
TCGTGCAACGGTCGCAGTTAATCGTCGTTATAAATCTCAGAGCGGTGAGCGTGAGGCGGATTTTGTAAATGTGGTTGTCT
GGGGGCGTCTAGCTGAGACTTTAGCCAGTTATGCAAGTAAGGGCAGCTTGATTTCTCTGGATGGTGAGCTACGGACTCGT
CGCTATGAGAAGGAGGGGGCGACTCATTATGTGACAGAAGTGCTCTGTCATAGCTTCCAGCTCCTGGAAAGTCGGGCCCA
GCGCGCTCTGCGTGAAAATAATAGCGGAGCTGATTTAGCAGATTTGGTGTTGGAAGAAGAGGAACTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3YS32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae D39

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae R6

82.443

100

0.824
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.809
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment