Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DQM73_RS11035 Genome accession   NZ_LS483346
Coordinates   2229612..2230007 (-) Length   131 a.a.
NCBI ID   WP_002896737.1    Uniprot ID   A0A0B7GMJ4
Organism   Streptococcus sanguinis strain NCTC11085     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2224612..2235007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS11015 (NCTC11085_02165) - 2225076..2226359 (-) 1284 WP_002927052.1 ABC transporter substrate-binding protein -
  DQM73_RS11020 (NCTC11085_02166) - 2226356..2227039 (-) 684 WP_002896732.1 response regulator transcription factor -
  DQM73_RS11025 (NCTC11085_02167) - 2227032..2228345 (-) 1314 WP_002927054.1 sensor histidine kinase -
  DQM73_RS11030 (NCTC11085_02168) - 2228345..2229331 (-) 987 WP_002927055.1 substrate-binding domain-containing protein -
  DQM73_RS11035 (NCTC11085_02169) ssbB/cilA 2229612..2230007 (-) 396 WP_002896737.1 single-stranded DNA-binding protein Machinery gene
  DQM73_RS11040 (NCTC11085_02170) - 2230137..2230724 (+) 588 WP_002934548.1 hypothetical protein -
  DQM73_RS11045 (NCTC11085_02171) ytpR 2230805..2231431 (-) 627 WP_002903594.1 YtpR family tRNA-binding protein -
  DQM73_RS11050 (NCTC11085_02172) - 2231428..2231763 (-) 336 WP_002903593.1 thioredoxin family protein -
  DQM73_RS11055 (NCTC11085_02173) - 2231760..2232047 (-) 288 WP_002903480.1 DUF4651 domain-containing protein -
  DQM73_RS11060 (NCTC11085_02174) pepA 2232218..2233282 (+) 1065 WP_002927070.1 glutamyl aminopeptidase -
  DQM73_RS11065 (NCTC11085_02175) - 2233401..2234885 (+) 1485 WP_002927072.1 DUF1846 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14711.57 Da        Isoelectric Point: 6.7246

>NTDB_id=1137719 DQM73_RS11035 WP_002896737.1 2229612..2230007(-) (ssbB/cilA) [Streptococcus sanguinis strain NCTC11085]
MYNKVIVIGRLTATPELHKTANEKSVARATVAVNRRYKSQSGEREADFVNVVVWGRLAETLASYASKGSLISLDGELRTR
RYEKEGATHYVTEVLCHSFQLLESRAQRALRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1137719 DQM73_RS11035 WP_002896737.1 2229612..2230007(-) (ssbB/cilA) [Streptococcus sanguinis strain NCTC11085]
ATGTATAATAAAGTAATTGTAATCGGTCGGCTGACGGCTACGCCTGAACTGCACAAGACTGCGAATGAAAAATCTGTGGC
TCGCGCAACAGTCGCGGTTAATCGTCGTTATAAATCTCAGAGTGGTGAGCGTGAGGCGGATTTTGTAAATGTGGTTGTCT
GGGGGCGTCTAGCTGAGACTTTAGCCAGCTATGCAAGTAAGGGCAGCTTGATTTCTCTGGATGGTGAGCTACGGACTCGT
CGCTATGAGAAGGAGGGGGCGACTCATTATGTGACAGAGGTGCTCTGTCATAGCTTCCAGCTTCTGGAAAGTCGGGCTCA
GCGCGCTCTGCGTGAAAATAACAGCGGAGCTGATTTAGCAGATTTAGTATTGGAAGAAGAGGAACTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7GMJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment