Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DQL23_RS03165 Genome accession   NZ_LS483341
Coordinates   665856..666251 (-) Length   131 a.a.
NCBI ID   WP_046164720.1    Uniprot ID   A0A0F5MM81
Organism   Streptococcus gordonii strain NCTC7865     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 660856..671251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS10995 - 663092..663226 (+) 135 Protein_615 IS3 family transposase -
  DQL23_RS03150 (NCTC7865_00628) - 663332..663535 (+) 204 WP_002901686.1 helix-turn-helix transcriptional regulator -
  DQL23_RS10795 (NCTC7865_00629) - 663532..663696 (+) 165 WP_169791776.1 hypothetical protein -
  DQL23_RS03155 (NCTC7865_00630) - 663706..664140 (+) 435 WP_060553812.1 hypothetical protein -
  DQL23_RS03160 (NCTC7865_00631) - 664193..665677 (-) 1485 WP_060553926.1 DUF1846 domain-containing protein -
  DQL23_RS03165 (NCTC7865_00632) ssbB/cilA 665856..666251 (-) 396 WP_046164720.1 single-stranded DNA-binding protein Machinery gene
  DQL23_RS03170 (NCTC7865_00633) ytpR 666315..666941 (-) 627 WP_060553813.1 YtpR family tRNA-binding protein -
  DQL23_RS03175 (NCTC7865_00634) - 666958..667275 (-) 318 WP_060553814.1 thioredoxin family protein -
  DQL23_RS03180 (NCTC7865_00635) - 667275..667559 (-) 285 WP_060553815.1 DUF4651 domain-containing protein -
  DQL23_RS03185 (NCTC7865_00636) pepA 667740..668807 (+) 1068 WP_060553816.1 glutamyl aminopeptidase -
  DQL23_RS03190 (NCTC7865_00637) - 669057..670043 (+) 987 WP_060553817.1 sugar ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14776.67 Da        Isoelectric Point: 6.2467

>NTDB_id=1137470 DQL23_RS03165 WP_046164720.1 665856..666251(-) (ssbB/cilA) [Streptococcus gordonii strain NCTC7865]
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRFKDQNGEREADFINIVLWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1137470 DQL23_RS03165 WP_046164720.1 665856..666251(-) (ssbB/cilA) [Streptococcus gordonii strain NCTC7865]
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACAATTGCTGTTAACCGTCGTTTTAAGGATCAAAACGGTGAACGCGAAGCAGACTTTATCAATATTGTCCTTT
GGGGCAAATTGGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTGATCTCTCTGGACGGCGAACTACGGACCCGT
CGTTATGAAAAAGACGGTGTGACTCACTATGTCACAGAAGTCCTTGGACATGGTTTCCAGCTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGAGCCGATTTGGCTGACCTAGTCTTGGAAGAAGAGGAGCTTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5MM81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae Rx1

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae D39

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae R6

83.969

100

0.84
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

81.679

100

0.817
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

80.916

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment