Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQL09_RS05720 Genome accession   NZ_LS483307
Coordinates   1074062..1074454 (-) Length   130 a.a.
NCBI ID   WP_011017370.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC5163     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1069062..1079454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL09_RS05670 (NCTC5163_01133) - 1069574..1069891 (-) 318 WP_011017379.1 P27 family phage terminase small subunit -
  DQL09_RS05675 (NCTC5163_01134) - 1070032..1070337 (-) 306 WP_011017378.1 HNH endonuclease -
  DQL09_RS05680 (NCTC5163_01135) - 1070330..1070716 (-) 387 WP_011017377.1 hypothetical protein -
  DQL09_RS05685 (NCTC5163_01136) - 1070742..1070945 (-) 204 WP_011017376.1 hypothetical protein -
  DQL09_RS05690 (NCTC5163_01137) - 1071003..1071296 (-) 294 WP_011017375.1 hypothetical protein -
  DQL09_RS05695 (NCTC5163_01138) - 1071450..1072025 (-) 576 WP_011054435.1 site-specific integrase -
  DQL09_RS05700 (NCTC5163_01139) - 1072185..1072586 (-) 402 WP_011017373.1 hypothetical protein -
  DQL09_RS05705 (NCTC5163_01140) - 1072601..1073428 (-) 828 WP_011017372.1 prohibitin family protein -
  DQL09_RS05710 (NCTC5163_01141) - 1073431..1073769 (-) 339 WP_011017371.1 helix-turn-helix domain-containing protein -
  DQL09_RS05715 (NCTC5163_01142) - 1073766..1074047 (-) 282 WP_011054431.1 hypothetical protein -
  DQL09_RS05720 (NCTC5163_01143) ssbA 1074062..1074454 (-) 393 WP_011017370.1 single-stranded DNA-binding protein Machinery gene
  DQL09_RS05725 (NCTC5163_01144) - 1074451..1074672 (-) 222 WP_011017369.1 hypothetical protein -
  DQL09_RS05730 (NCTC5163_01145) - 1074669..1075154 (-) 486 WP_011017368.1 DUF1642 domain-containing protein -
  DQL09_RS05735 (NCTC5163_01146) - 1075159..1075791 (-) 633 WP_023611652.1 N-6 DNA methylase -
  DQL09_RS05740 (NCTC5163_01147) - 1075793..1076062 (-) 270 WP_011017366.1 hypothetical protein -
  DQL09_RS10145 (NCTC5163_01148) - 1076059..1076229 (-) 171 WP_023611649.1 hypothetical protein -
  DQL09_RS05745 (NCTC5163_01149) - 1076226..1076669 (-) 444 WP_011017365.1 YopX family protein -
  DQL09_RS10440 (NCTC5163_01150) - 1076686..1076811 (-) 126 WP_257000584.1 hypothetical protein -
  DQL09_RS05750 (NCTC5163_01151) - 1076825..1077052 (-) 228 WP_032467212.1 hypothetical protein -
  DQL09_RS05755 (NCTC5163_01152) - 1077052..1077864 (-) 813 WP_063265941.1 ATP-binding protein -
  DQL09_RS05760 (NCTC5163_01153) - 1077864..1078625 (-) 762 WP_011017361.1 conserved phage C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14755.61 Da        Isoelectric Point: 6.3209

>NTDB_id=1135782 DQL09_RS05720 WP_011017370.1 1074062..1074454(-) (ssbA) [Streptococcus pyogenes strain NCTC5163]
MINNVVLIGRLTKDVELRYTPSQVACAQFTLAVNRNFKNQDGQKEADFINCVIWRKSAENLSNWAKKGQLIAITGRIQTR
NYENQQGQRVYVTEVVAESFQILEKRDNTANTSSLADSMPDYGPEPDLPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=1135782 DQL09_RS05720 WP_011017370.1 1074062..1074454(-) (ssbA) [Streptococcus pyogenes strain NCTC5163]
ATGATCAATAACGTTGTTTTGATTGGCCGCTTAACAAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTAATTTTAAAAATCAAGATGGGCAAAAAGAGGCTGACTTTATCAATTGTGTCATCT
GGCGAAAGTCTGCCGAGAATTTATCAAACTGGGCTAAAAAAGGGCAATTGATTGCAATAACAGGACGCATACAGACTCGT
AATTATGAAAACCAGCAAGGACAACGTGTCTATGTTACGGAAGTTGTCGCAGAAAGCTTCCAGATTTTGGAGAAGCGTGA
TAACACTGCAAACACAAGCAGTTTAGCTGATAGCATGCCAGACTATGGACCAGAACCAGATTTACCATTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.224

82.308

0.562
  ssb Latilactobacillus sakei subsp. sakei 23K

66.972

83.846

0.562
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.148

100

0.5
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.853

100

0.469
  ssbB/cilA Streptococcus mitis NCTC 12261

44.853

100

0.469
  ssbB/cilA Streptococcus pneumoniae Rx1

44.118

100

0.462
  ssbB/cilA Streptococcus pneumoniae R6

44.118

100

0.462
  ssbB/cilA Streptococcus pneumoniae D39

44.118

100

0.462
  ssbB/cilA Streptococcus mitis SK321

43.704

100

0.454
  ssbA Streptococcus mutans UA159

43.704

100

0.454
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

81.538

0.438
  ssbB Lactococcus lactis subsp. cremoris KW2

42.636

99.231

0.423

Multiple sequence alignment