Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | FGL12_RS09710 | Genome accession | NZ_LR594041 |
| Coordinates | 2014558..2014953 (+) | Length | 131 a.a. |
| NCBI ID | WP_012130920.1 | Uniprot ID | A0AAQ4J6T1 |
| Organism | Streptococcus gordonii strain NCTC9124 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2009558..2019953
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL12_RS09685 (NCTC9124_01952) | - | 2010767..2011753 (-) | 987 | WP_041789798.1 | sugar ABC transporter substrate-binding protein | - |
| FGL12_RS09690 (NCTC9124_01953) | pepA | 2012002..2013069 (-) | 1068 | WP_138101342.1 | glutamyl aminopeptidase | - |
| FGL12_RS09695 (NCTC9124_01954) | - | 2013250..2013534 (+) | 285 | WP_111724166.1 | DUF4651 domain-containing protein | - |
| FGL12_RS09700 (NCTC9124_01955) | - | 2013534..2013851 (+) | 318 | WP_138101427.1 | thioredoxin family protein | - |
| FGL12_RS09705 (NCTC9124_01956) | ytpR | 2013868..2014494 (+) | 627 | WP_138101343.1 | YtpR family tRNA-binding protein | - |
| FGL12_RS09710 (NCTC9124_01957) | ssbB/cilA | 2014558..2014953 (+) | 396 | WP_012130920.1 | single-stranded DNA-binding protein | Machinery gene |
| FGL12_RS09715 (NCTC9124_01958) | - | 2015132..2016616 (+) | 1485 | WP_041789909.1 | DUF1846 domain-containing protein | - |
| FGL12_RS09720 (NCTC9124_01959) | - | 2016670..2017104 (-) | 435 | WP_138101344.1 | hypothetical protein | - |
| FGL12_RS10940 (NCTC9124_01960) | - | 2017114..2017278 (-) | 165 | WP_012130923.1 | hypothetical protein | - |
| FGL12_RS09725 (NCTC9124_01961) | - | 2017275..2017478 (-) | 204 | WP_012130924.1 | helix-turn-helix transcriptional regulator | - |
| FGL12_RS09735 (NCTC9124_01962) | - | 2017775..2018812 (-) | 1038 | WP_138101346.1 | HAMP domain-containing sensor histidine kinase | - |
| FGL12_RS09740 (NCTC9124_01963) | - | 2018779..2019477 (-) | 699 | WP_084939344.1 | response regulator transcription factor | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14766.59 Da Isoelectric Point: 6.2466
>NTDB_id=1127519 FGL12_RS09710 WP_012130920.1 2014558..2014953(+) (ssbB/cilA) [Streptococcus gordonii strain NCTC9124]
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRYKDQNGEREADFINIVLWGKSAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRYKDQNGEREADFINIVLWGKSAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1127519 FGL12_RS09710 WP_012130920.1 2014558..2014953(+) (ssbB/cilA) [Streptococcus gordonii strain NCTC9124]
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACGATTGCTGTCAACCGCCGTTACAAGGATCAAAATGGTGAGCGCGAAGCAGACTTCATTAATATCGTCCTTT
GGGGCAAATCAGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTAATTTCTCTGGACGGCGAATTACGGACCCGT
CGTTATGAGAAAGATGGCGTAACTCACTATGTCACAGAAGTGCTTGGTCATGGTTTCCAACTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGGGCTGATTTAGCTGATCTAGTCTTGGAAGAAGAGGAACTTCCTTTCTAA
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACGATTGCTGTCAACCGCCGTTACAAGGATCAAAATGGTGAGCGCGAAGCAGACTTCATTAATATCGTCCTTT
GGGGCAAATCAGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTAATTTCTCTGGACGGCGAATTACGGACCCGT
CGTTATGAGAAAGATGGCGTAACTCACTATGTCACAGAAGTGCTTGGTCATGGTTTCCAACTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGGGCTGATTTAGCTGATCTAGTCTTGGAAGAAGAGGAACTTCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus mitis SK321 |
83.206 |
100 |
0.832 |
| ssbA | Streptococcus mutans UA159 |
80.153 |
100 |
0.802 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
74.046 |
100 |
0.74 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
63.393 |
85.496 |
0.542 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.943 |
80.916 |
0.412 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.057 |
80.916 |
0.397 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
44.444 |
82.443 |
0.366 |