Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   FGK96_RS00640 Genome accession   NZ_LR594036
Coordinates   105976..106302 (+) Length   108 a.a.
NCBI ID   WP_003083111.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 100976..111302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS00625 (NCTC10710_00134) - 103622..103987 (+) 366 WP_138080436.1 DUF1033 family protein -
  FGK96_RS00630 (NCTC10710_00135) comYA 104068..105009 (+) 942 WP_138080438.1 competence type IV pilus ATPase ComGA Machinery gene
  FGK96_RS00635 (NCTC10710_00136) comYB 104891..105976 (+) 1086 WP_269472105.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGK96_RS00640 (NCTC10710_00137) comYC 105976..106302 (+) 327 WP_003083111.1 competence type IV pilus major pilin ComGC Machinery gene
  FGK96_RS00645 (NCTC10710_00138) comGD 106349..106690 (+) 342 WP_258558001.1 competence type IV pilus minor pilin ComGD -
  FGK96_RS00650 (NCTC10710_00139) comGE 106662..106955 (+) 294 WP_172601572.1 competence type IV pilus minor pilin ComGE -
  FGK96_RS00655 (NCTC10710_00140) comGF 106915..107376 (+) 462 WP_138080440.1 competence type IV pilus minor pilin ComGF -
  FGK96_RS00660 (NCTC10710_00141) comGG 107354..107737 (+) 384 WP_138080442.1 competence type IV pilus minor pilin ComGG -
  FGK96_RS00665 (NCTC10710_00142) comYH 107796..108752 (+) 957 WP_138080444.1 class I SAM-dependent methyltransferase Machinery gene
  FGK96_RS00670 (NCTC10710_00143) - 108808..110001 (+) 1194 WP_138080446.1 acetate kinase -
  FGK96_RS00675 (NCTC10710_00144) - 110267..110476 (+) 210 WP_093959144.1 helix-turn-helix transcriptional regulator -
  FGK96_RS00680 (NCTC10710_00145) - 110473..110925 (+) 453 WP_138080448.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12293.37 Da        Isoelectric Point: 9.3041

>NTDB_id=1127332 FGK96_RS00640 WP_003083111.1 105976..106302(+) (comYC) [Streptococcus porcinus strain NCTC10710]
MQKLGNKIKDVSLEGFTLLEMLLVLLIISVLMLLFIPNLNKQKDMVTDKGKAAVVKIVDNQAELYELNQGASPKLSELEN
KGDISKEQAKAYRDYYVKHDNKNRKVQD

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1127332 FGK96_RS00640 WP_003083111.1 105976..106302(+) (comYC) [Streptococcus porcinus strain NCTC10710]
ATGCAGAAATTAGGAAACAAAATAAAAGATGTCAGCCTAGAAGGATTCACTTTACTAGAGATGTTATTGGTCTTATTAAT
CATTAGTGTACTCATGCTTCTCTTTATTCCCAACCTAAATAAACAAAAAGATATGGTTACGGATAAAGGTAAGGCTGCAG
TTGTAAAAATTGTTGATAACCAGGCAGAACTTTATGAGCTAAATCAAGGAGCTAGCCCCAAATTGAGTGAATTGGAAAAT
AAAGGTGACATCAGTAAAGAGCAAGCAAAAGCCTATCGAGACTATTATGTTAAACATGACAACAAAAATCGCAAAGTGCA
GGATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

63

92.593

0.583
  comYC Streptococcus mutans UA159

63

92.593

0.583
  comGC/cglC Streptococcus mitis SK321

57.407

100

0.574
  comGC/cglC Streptococcus pneumoniae TIGR4

55.556

100

0.556
  comGC/cglC Streptococcus pneumoniae Rx1

55.556

100

0.556
  comGC/cglC Streptococcus pneumoniae D39

55.556

100

0.556
  comGC/cglC Streptococcus pneumoniae R6

55.556

100

0.556
  comGC/cglC Streptococcus mitis NCTC 12261

54.63

100

0.546
  comYC Streptococcus gordonii str. Challis substr. CH1

55.769

96.296

0.537
  comGC Lactococcus lactis subsp. cremoris KW2

49.524

97.222

0.481
  comYC Streptococcus suis isolate S10

52.326

79.63

0.417

Multiple sequence alignment