Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   FGK96_RS00635 Genome accession   NZ_LR594036
Coordinates   104891..105976 (+) Length   361 a.a.
NCBI ID   WP_269472105.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99891..110976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS00625 (NCTC10710_00134) - 103622..103987 (+) 366 WP_138080436.1 DUF1033 family protein -
  FGK96_RS00630 (NCTC10710_00135) comYA 104068..105009 (+) 942 WP_138080438.1 competence type IV pilus ATPase ComGA Machinery gene
  FGK96_RS00635 (NCTC10710_00136) comYB 104891..105976 (+) 1086 WP_269472105.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGK96_RS00640 (NCTC10710_00137) comYC 105976..106302 (+) 327 WP_003083111.1 competence type IV pilus major pilin ComGC Machinery gene
  FGK96_RS00645 (NCTC10710_00138) comGD 106349..106690 (+) 342 WP_258558001.1 competence type IV pilus minor pilin ComGD -
  FGK96_RS00650 (NCTC10710_00139) comGE 106662..106955 (+) 294 WP_172601572.1 competence type IV pilus minor pilin ComGE -
  FGK96_RS00655 (NCTC10710_00140) comGF 106915..107376 (+) 462 WP_138080440.1 competence type IV pilus minor pilin ComGF -
  FGK96_RS00660 (NCTC10710_00141) comGG 107354..107737 (+) 384 WP_138080442.1 competence type IV pilus minor pilin ComGG -
  FGK96_RS00665 (NCTC10710_00142) comYH 107796..108752 (+) 957 WP_138080444.1 class I SAM-dependent methyltransferase Machinery gene
  FGK96_RS00670 (NCTC10710_00143) - 108808..110001 (+) 1194 WP_138080446.1 acetate kinase -
  FGK96_RS00675 (NCTC10710_00144) - 110267..110476 (+) 210 WP_093959144.1 helix-turn-helix transcriptional regulator -
  FGK96_RS00680 (NCTC10710_00145) - 110473..110925 (+) 453 WP_138080448.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41489.44 Da        Isoelectric Point: 10.0333

>NTDB_id=1127331 FGK96_RS00635 WP_269472105.1 104891..105976(+) (comYB) [Streptococcus porcinus strain NCTC10710]
MPSRHSKLIPIKSGIKTLTTYLQKDISLNNRHSRKKLTTKKQAKLIQLLHNLSQSGFNLAEMIAFLEKTQILDRSHLNLM
KTDLLNGCSLSEMMRHLGFPDGIVTQLSLAEAHGNTKKCLGKVEDYLVQTQKIRQKTIEVVTYPIILLTFLILIVLGLRH
YLMPQIEKQSTLTYFLNNFPVYLLSLSIIILLTVIALVIRWRKLGKMKQIIQYSRIPLLASFLKLYMTAFYAREWGNLIS
QGIELSQIVTIMSIEKSDLIKEIGLDMRQSFLEGQSFHEKVKGYPFFSDELSLMIEYGEIKGKLGQELDIYGQLTWDAYF
RKLFQATQIIQPFIFMIVALIIVMIYAAMLLPMYNTIGGTI

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1127331 FGK96_RS00635 WP_269472105.1 104891..105976(+) (comYB) [Streptococcus porcinus strain NCTC10710]
TTGCCATCGAGACATTCGAAACTCATTCCAATCAAGAGTGGAATCAAAACCTTGACCACTTACTTGCAAAAGGACATATC
ACTCAACAACAGGCACTCTCGGAAAAAATTAACGACTAAAAAACAAGCCAAGTTAATCCAGCTCTTACATAATTTAAGCC
AAAGTGGATTTAATCTAGCAGAGATGATCGCCTTCTTAGAAAAAACACAGATTTTAGACCGATCACATCTTAACTTGATG
AAGACTGATTTGTTAAATGGATGTAGTTTATCAGAAATGATGAGGCATTTAGGATTTCCTGATGGTATTGTTACCCAACT
AAGCTTAGCAGAAGCTCATGGCAATACCAAAAAATGTTTGGGTAAAGTTGAAGATTACCTAGTACAGACACAAAAAATTA
GGCAAAAGACAATTGAAGTTGTGACTTATCCCATCATTCTCCTTACTTTTTTAATTTTAATTGTCCTAGGTTTGAGACAT
TACTTAATGCCTCAGATAGAGAAGCAAAGCACTTTGACCTATTTTCTCAATAATTTCCCAGTTTACCTACTAAGTTTGTC
AATTATTATTCTCCTTACTGTCATTGCTTTGGTGATCAGATGGCGCAAACTTGGAAAGATGAAGCAGATAATACAATACA
GCCGGATACCTTTACTGGCTTCCTTCCTAAAGCTTTATATGACGGCTTTTTATGCCCGTGAATGGGGGAATTTAATTAGT
CAAGGTATCGAATTGAGTCAAATAGTAACCATTATGAGTATTGAAAAATCTGATTTGATAAAAGAAATAGGTTTAGATAT
GAGACAATCATTTCTTGAGGGGCAGAGTTTCCACGAAAAAGTGAAGGGATATCCCTTTTTTAGTGATGAGTTGAGTTTGA
TGATTGAATATGGTGAAATCAAAGGGAAATTAGGTCAAGAACTGGATATTTATGGCCAACTGACATGGGATGCCTATTTT
CGAAAACTCTTTCAAGCGACACAGATCATTCAACCTTTTATCTTTATGATTGTCGCCCTGATTATTGTAATGATTTATGC
CGCTATGCTATTACCCATGTATAACACAATTGGAGGAACAATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(46-164)

Type II secretion system (T2SS), protein F (T2SSF)

(232-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

53.097

93.906

0.499
  comYB Streptococcus mutans UA159

52.802

93.906

0.496
  comGB/cglB Streptococcus mitis SK321

48.949

92.244

0.452
  comGB/cglB Streptococcus mitis NCTC 12261

48.649

92.244

0.449
  comYB Streptococcus gordonii str. Challis substr. CH1

46.064

95.014

0.438
  comGB/cglB Streptococcus pneumoniae Rx1

46.547

92.244

0.429
  comGB/cglB Streptococcus pneumoniae D39

46.547

92.244

0.429
  comGB/cglB Streptococcus pneumoniae R6

46.547

92.244

0.429
  comGB/cglB Streptococcus pneumoniae TIGR4

46.547

92.244

0.429
  comGB Lactococcus lactis subsp. cremoris KW2

43.275

94.737

0.41

Multiple sequence alignment