Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   FGK96_RS00630 Genome accession   NZ_LR594036
Coordinates   104068..105009 (+) Length   313 a.a.
NCBI ID   WP_138080438.1    Uniprot ID   -
Organism   Streptococcus porcinus strain NCTC10710     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99068..110009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK96_RS00620 (NCTC10710_00133) rpoC 99862..103497 (+) 3636 WP_138080434.1 DNA-directed RNA polymerase subunit beta' -
  FGK96_RS00625 (NCTC10710_00134) - 103622..103987 (+) 366 WP_138080436.1 DUF1033 family protein -
  FGK96_RS00630 (NCTC10710_00135) comYA 104068..105009 (+) 942 WP_138080438.1 competence type IV pilus ATPase ComGA Machinery gene
  FGK96_RS00635 (NCTC10710_00136) comYB 104891..105976 (+) 1086 WP_269472105.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGK96_RS00640 (NCTC10710_00137) comYC 105976..106302 (+) 327 WP_003083111.1 competence type IV pilus major pilin ComGC Machinery gene
  FGK96_RS00645 (NCTC10710_00138) comGD 106349..106690 (+) 342 WP_258558001.1 competence type IV pilus minor pilin ComGD -
  FGK96_RS00650 (NCTC10710_00139) comGE 106662..106955 (+) 294 WP_172601572.1 competence type IV pilus minor pilin ComGE -
  FGK96_RS00655 (NCTC10710_00140) comGF 106915..107376 (+) 462 WP_138080440.1 competence type IV pilus minor pilin ComGF -
  FGK96_RS00660 (NCTC10710_00141) comGG 107354..107737 (+) 384 WP_138080442.1 competence type IV pilus minor pilin ComGG -
  FGK96_RS00665 (NCTC10710_00142) comYH 107796..108752 (+) 957 WP_138080444.1 class I SAM-dependent methyltransferase Machinery gene
  FGK96_RS00670 (NCTC10710_00143) - 108808..110001 (+) 1194 WP_138080446.1 acetate kinase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35592.23 Da        Isoelectric Point: 9.0753

>NTDB_id=1127330 FGK96_RS00630 WP_138080438.1 104068..105009(+) (comYA) [Streptococcus porcinus strain NCTC10710]
MIQKIGEALVSQAVNLKAQDIYIIPYKKQYKVFMRIGDERRFIDNYEMKQMASLISHFKFVAGMNIGEKRRCQLGACDYK
VTLSESIPLRLSSVGNFRGFESLVIRLLTTVNKPLNYWFDTDQKVEKVISGRGLYLFSGPVGSGKTTLMYQLLTHIAKDK
QVITIEDPVEIQEDSLLQIQVNESIGMTYDNLIKLSLRHRPDYLIIGEIRDVETAKAVIRASLTGAIVFSTVHAKSIPGV
YKRLLELGIKREEINHTLKFIAYQRLIAGGGLIDFAIETFETHSNQEWNQNLDHLLAKGHITQQQALSEKIND

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1127330 FGK96_RS00630 WP_138080438.1 104068..105009(+) (comYA) [Streptococcus porcinus strain NCTC10710]
ATGATACAAAAAATAGGTGAAGCATTAGTTAGTCAGGCAGTAAATCTAAAGGCGCAAGATATCTATATAATCCCTTATAA
AAAGCAGTATAAAGTTTTCATGAGAATTGGAGACGAGAGGCGATTTATTGATAATTATGAAATGAAACAGATGGCAAGTC
TTATCAGCCATTTTAAGTTTGTAGCAGGGATGAATATAGGAGAAAAGAGACGCTGTCAACTTGGAGCCTGTGACTACAAG
GTAACTTTATCAGAATCAATTCCGTTACGTCTATCTTCTGTTGGGAATTTCAGAGGTTTTGAAAGCCTAGTTATCAGGCT
CTTAACGACTGTTAATAAGCCCCTCAACTACTGGTTTGATACTGATCAAAAAGTAGAAAAAGTTATTTCTGGAAGAGGTC
TTTATCTTTTCTCGGGTCCCGTAGGGTCGGGCAAAACGACTCTCATGTATCAACTACTGACGCATATAGCAAAGGATAAA
CAAGTTATTACAATTGAAGATCCAGTTGAGATTCAAGAGGACAGCTTGTTACAAATTCAAGTAAATGAAAGTATTGGAAT
GACTTATGATAATCTTATTAAACTTTCCCTCAGACATCGTCCAGATTATTTAATTATTGGAGAGATTCGAGATGTTGAGA
CCGCAAAGGCAGTCATTAGAGCAAGCTTAACAGGAGCTATAGTCTTTTCTACTGTCCATGCAAAAAGTATTCCAGGAGTG
TATAAAAGATTGTTAGAACTAGGTATCAAAAGAGAAGAGATAAATCATACTCTAAAATTTATTGCGTACCAGAGGTTGAT
AGCAGGAGGAGGACTTATTGACTTTGCCATCGAGACATTCGAAACTCATTCCAATCAAGAGTGGAATCAAAACCTTGACC
ACTTACTTGCAAAAGGACATATCACTCAACAACAGGCACTCTCGGAAAAAATTAACGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

63.578

100

0.636
  comYA Streptococcus mutans UA140

63.578

100

0.636
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.218

99.681

0.61
  comYA Streptococcus gordonii str. Challis substr. CH1

60.383

100

0.604
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

57.372

99.681

0.572
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

57.051

99.681

0.569
  comGA/cglA/cilD Streptococcus pneumoniae D39

57.051

99.681

0.569
  comGA/cglA/cilD Streptococcus pneumoniae R6

57.051

99.681

0.569
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

57.051

99.681

0.569
  comGA Lactococcus lactis subsp. cremoris KW2

50.962

99.681

0.508

Multiple sequence alignment