Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGL04_RS02040 Genome accession   NZ_LR594035
Coordinates   366711..367058 (+) Length   115 a.a.
NCBI ID   WP_138068055.1    Uniprot ID   A0A4U9XPU4
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 360111..390599 366711..367058 within 0


Gene organization within MGE regions


Location: 360111..390599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS01980 (NCTC5385_00417) - 360111..361199 (-) 1089 WP_138068044.1 site-specific integrase -
  FGL04_RS01985 (NCTC5385_00418) - 361377..361919 (-) 543 WP_138068045.1 hypothetical protein -
  FGL04_RS01990 (NCTC5385_00419) - 361974..362321 (-) 348 WP_138068046.1 ImmA/IrrE family metallo-endopeptidase -
  FGL04_RS01995 (NCTC5385_00420) - 362318..362659 (-) 342 WP_225247753.1 helix-turn-helix domain-containing protein -
  FGL04_RS02000 (NCTC5385_00421) - 362830..363045 (+) 216 WP_138068047.1 XRE family transcriptional regulator -
  FGL04_RS02005 (NCTC5385_00422) - 363140..363397 (+) 258 WP_138068048.1 hypothetical protein -
  FGL04_RS02010 (NCTC5385_00423) - 363424..363657 (+) 234 WP_138068049.1 hypothetical protein -
  FGL04_RS02015 (NCTC5385_00425) - 363797..364390 (-) 594 WP_138068050.1 DUF4145 domain-containing protein -
  FGL04_RS02020 (NCTC5385_00426) - 364555..365388 (+) 834 WP_138068051.1 DnaD domain-containing protein -
  FGL04_RS02025 (NCTC5385_00427) - 365369..365614 (+) 246 WP_138068052.1 hypothetical protein -
  FGL04_RS02030 (NCTC5385_00428) - 365598..365942 (+) 345 WP_138068053.1 hypothetical protein -
  FGL04_RS02035 (NCTC5385_00430) - 366008..366688 (+) 681 WP_138068054.1 PD-(D/E)XK nuclease-like domain-containing protein -
  FGL04_RS02040 (NCTC5385_00431) ssbA 366711..367058 (+) 348 WP_138068055.1 single-stranded DNA-binding protein Machinery gene
  FGL04_RS02045 (NCTC5385_00432) - 367015..367359 (+) 345 WP_225247754.1 RusA family crossover junction endodeoxyribonuclease -
  FGL04_RS02050 (NCTC5385_00433) - 367349..367672 (+) 324 WP_138068057.1 MazG-like family protein -
  FGL04_RS02055 (NCTC5385_00434) - 367669..367908 (+) 240 WP_138067962.1 hypothetical protein -
  FGL04_RS02060 (NCTC5385_00435) - 367926..368102 (+) 177 WP_138068058.1 DUF1653 domain-containing protein -
  FGL04_RS02065 (NCTC5385_00436) - 368099..368404 (+) 306 WP_138068059.1 hypothetical protein -
  FGL04_RS02070 (NCTC5385_00437) - 368717..369121 (+) 405 WP_138068060.1 transcriptional regulator -
  FGL04_RS02075 (NCTC5385_00438) - 369237..369779 (+) 543 WP_138068061.1 site-specific integrase -
  FGL04_RS02080 (NCTC5385_00439) - 370086..370424 (+) 339 WP_138068062.1 HNH endonuclease -
  FGL04_RS02085 (NCTC5385_00440) - 370535..370924 (+) 390 WP_138068063.1 P27 family phage terminase small subunit -
  FGL04_RS02090 (NCTC5385_00441) - 370962..372695 (+) 1734 WP_138069144.1 terminase large subunit -
  FGL04_RS02095 (NCTC5385_00442) - 372762..373961 (+) 1200 WP_138068064.1 phage portal protein -
  FGL04_RS02100 (NCTC5385_00443) - 373948..374526 (+) 579 WP_138068065.1 HK97 family phage prohead protease -
  FGL04_RS02105 (NCTC5385_00444) - 374523..375698 (+) 1176 WP_138068066.1 phage major capsid protein -
  FGL04_RS02110 (NCTC5385_00445) - 375712..376062 (+) 351 WP_138068067.1 hypothetical protein -
  FGL04_RS02115 (NCTC5385_00446) - 376138..376344 (+) 207 WP_225247755.1 hypothetical protein -
  FGL04_RS02120 (NCTC5385_00447) - 376388..376633 (+) 246 WP_229296022.1 phage head closure protein -
  FGL04_RS02125 (NCTC5385_00448) - 376630..376977 (+) 348 WP_138068070.1 HK97 gp10 family phage protein -
  FGL04_RS02130 (NCTC5385_00449) - 376974..377297 (+) 324 WP_138068071.1 hypothetical protein -
  FGL04_RS02135 (NCTC5385_00450) - 377313..377897 (+) 585 WP_138068072.1 major tail protein -
  FGL04_RS02140 (NCTC5385_00451) - 377910..378329 (+) 420 WP_138068073.1 hypothetical protein -
  FGL04_RS02145 (NCTC5385_00452) - 378604..381408 (+) 2805 WP_138068074.1 phage tail tape measure protein -
  FGL04_RS02150 (NCTC5385_00453) - 381405..382121 (+) 717 WP_138068075.1 phage tail protein -
  FGL04_RS02155 (NCTC5385_00454) - 382121..383476 (+) 1356 WP_138068076.1 phage tail spike protein -
  FGL04_RS02160 (NCTC5385_00455) - 383480..385252 (+) 1773 WP_138068077.1 SGNH/GDSL hydrolase family protein -
  FGL04_RS02165 (NCTC5385_00456) - 385269..385592 (+) 324 WP_138068078.1 hypothetical protein -
  FGL04_RS02170 (NCTC5385_00457) - 385594..385929 (+) 336 WP_138068079.1 phage holin -
  FGL04_RS02175 (NCTC5385_00458) - 385943..387010 (+) 1068 WP_077322830.1 SH3 domain-containing protein -
  FGL04_RS10690 (NCTC5385_00459) - 387051..387413 (-) 363 WP_171011209.1 hypothetical protein -
  FGL04_RS02185 (NCTC5385_00460) - 387772..388053 (+) 282 WP_138068080.1 DUF5960 family protein -
  FGL04_RS02190 (NCTC5385_00461) - 388283..388519 (+) 237 WP_003085174.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  FGL04_RS02195 (NCTC5385_00462) - 388872..389102 (+) 231 WP_138068081.1 ACT domain-containing protein -
  FGL04_RS02200 (NCTC5385_00464) - 389153..390359 (+) 1207 Protein_411 PFL family protein -
  FGL04_RS02205 (NCTC5385_00465) - 390450..390599 (+) 150 WP_007892114.1 CsbD family protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12794.23 Da        Isoelectric Point: 9.4579

>NTDB_id=1127284 FGL04_RS02040 WP_138068055.1 366711..367058(+) (ssbA) [Streptococcus pseudoporcinus strain NCTC5385]
MNNVSLVGRLTRDVELKYTNSQTAVATGTLAVNRTFKSQNGEREADFINIVAWRKTAEILSNYTSKGSQIGITGRIQTRN
YEGNDGKRVYVTEVVAEQVALLDSKPENQNQNSQL

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1127284 FGL04_RS02040 WP_138068055.1 366711..367058(+) (ssbA) [Streptococcus pseudoporcinus strain NCTC5385]
ATGAATAACGTAAGTTTAGTAGGACGATTAACAAGAGATGTAGAACTTAAATACACAAACTCACAAACAGCAGTCGCAAC
AGGAACATTAGCTGTTAACCGTACCTTTAAAAGCCAAAACGGTGAACGTGAGGCTGATTTTATTAATATTGTAGCGTGGA
GAAAAACTGCTGAAATTCTATCCAACTACACTTCTAAAGGTTCACAGATTGGAATCACTGGACGTATTCAAACACGAAAC
TACGAAGGTAATGACGGAAAACGTGTATATGTAACAGAAGTTGTAGCTGAACAAGTAGCATTACTTGATAGTAAGCCTGA
AAACCAAAATCAAAATTCTCAACTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9XPU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.905

91.304

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

60.952

91.304

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.046

94.783

0.522
  ssbB/cilA Streptococcus pneumoniae TIGR4

50

92.174

0.461
  ssbB/cilA Streptococcus mitis NCTC 12261

50

92.174

0.461
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

92.174

0.461
  ssbB/cilA Streptococcus pneumoniae Rx1

49.057

92.174

0.452
  ssbB/cilA Streptococcus pneumoniae D39

49.057

92.174

0.452
  ssbB/cilA Streptococcus pneumoniae R6

49.057

92.174

0.452
  ssbB/cilA Streptococcus mitis SK321

49.057

92.174

0.452
  ssbA Streptococcus mutans UA159

47.115

90.435

0.426
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

91.304

0.417

Multiple sequence alignment