Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EL255_RS18780 Genome accession   NZ_LR134376
Coordinates   4055760..4057001 (+) Length   413 a.a.
NCBI ID   WP_042653208.1    Uniprot ID   -
Organism   Aeromonas encheleia strain NCTC12917     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4050760..4062001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL255_RS18750 (NCTC12917_03764) ampD 4051134..4051706 (-) 573 WP_042653321.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EL255_RS18755 (NCTC12917_03765) - 4051841..4052311 (+) 471 WP_042653204.1 TIGR02281 family clan AA aspartic protease -
  EL255_RS18760 (NCTC12917_03766) nadC 4052315..4053172 (+) 858 WP_042653205.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EL255_RS18770 - 4053494..4053919 (+) 426 WP_042653206.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EL255_RS18775 (NCTC12917_03767) pilB 4053923..4055629 (+) 1707 WP_042653207.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  EL255_RS18780 (NCTC12917_03768) pilC 4055760..4057001 (+) 1242 WP_042653208.1 type II secretion system F family protein Machinery gene
  EL255_RS18785 (NCTC12917_03769) pilD 4057106..4057978 (+) 873 WP_042653209.1 A24 family peptidase Machinery gene
  EL255_RS18790 (NCTC12917_03770) coaE 4057997..4058611 (+) 615 WP_042653210.1 dephospho-CoA kinase -
  EL255_RS18795 (NCTC12917_03771) zapD 4058649..4059371 (+) 723 WP_042653211.1 cell division protein ZapD -
  EL255_RS18800 (NCTC12917_03772) yacG 4059388..4059582 (+) 195 WP_042653212.1 DNA gyrase inhibitor YacG -
  EL255_RS18805 (NCTC12917_03773) mutT 4059639..4060046 (-) 408 WP_042653213.1 8-oxo-dGTP diphosphatase MutT -
  EL255_RS18810 (NCTC12917_03774) - 4060055..4061239 (-) 1185 WP_042653214.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45518.60 Da        Isoelectric Point: 9.9857

>NTDB_id=1122447 EL255_RS18780 WP_042653208.1 4055760..4057001(+) (pilC) [Aeromonas encheleia strain NCTC12917]
MATLAQKQNAPKKVFSFRWHGVNRKGQKVSGELQADSINTVKNELRKQGVNVTKVSKRSQGLFSKGGAKIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRDLIGQIAADVETGTPMSEALRRHPRHFDTLYCDLVEAGEQSGALETIYDRI
AIYREKSEALKSKIKKAMFYPAMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPIFTQFVIGISRFMQHWWYAIFGGIA
LAIFLYVRAWRSSQKVRDNTDRFILTIPIVGSILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAIMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPFIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1122447 EL255_RS18780 WP_042653208.1 4055760..4057001(+) (pilC) [Aeromonas encheleia strain NCTC12917]
ATGGCAACATTAGCTCAAAAACAGAATGCCCCGAAGAAGGTCTTCTCCTTCCGCTGGCACGGGGTCAATCGCAAGGGGCA
GAAAGTCTCCGGCGAGTTGCAGGCCGACAGCATCAACACCGTCAAGAACGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTCAGCAAGCGGAGCCAGGGGCTGTTTTCCAAGGGTGGCGCCAAGATAAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGTGTGCCGCTGGTACAGAGTCTACAGATCATCGCGCGCGGCCACGAAAAGGCGGC
GGTACGCGACCTGATAGGCCAGATAGCCGCCGATGTGGAAACTGGCACCCCCATGTCGGAGGCGCTGCGCCGCCACCCCC
GCCACTTCGATACACTCTACTGCGACCTGGTCGAAGCGGGGGAGCAATCCGGCGCGCTGGAGACCATCTACGACAGGATC
GCCATCTACCGCGAGAAGAGCGAGGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTACCCAGCCATGGTCATCCTGGT
GGCCATCATAGTGACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGAGATCTTCAAGAGCTTCGGTGCCGAAC
TGCCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAACACTGGTGGTATGCGATCTTTGGCGGCATCGCC
CTCGCCATCTTCCTCTACGTGCGCGCCTGGCGCAGCTCCCAGAAGGTGCGGGACAACACGGACAGGTTCATCCTCACCAT
CCCCATAGTGGGCTCGATCCTGCACAAGGCAGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCGCTGGTTGACGCCCTGGTCTCGGCCGCCGGCGCCTCCGGCAACTATGTCTATCGCACCGCCATCATGGCCATCCGC
AACGAGGTCGTGGCCGGCATGCAGATCAACGTCGCCATGCGTACCGTGGACCTGTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGGGAGGAGTCCGGCGCCATCGATGACATGCTCTCCAAGGTGGCGGCCATCTTCGAGCAGGAAGTGGACGACA
TGGTCGATGGCCTTACTAGCTTGCTCGAGCCCTTCATCATGGTGGTGCTGGGGGTACTGGTCGGTGGCATGGTCGTCGCC
ATGTACCTGCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

52.868

97.094

0.513
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.666

98.547

0.47
  pilC Vibrio campbellii strain DS40M4

46.985

96.368

0.453
  pilG Neisseria gonorrhoeae MS11

40.741

98.063

0.4
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

37.25

96.852

0.361

Multiple sequence alignment