Detailed information NTG1122448

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EL255_RS18785
• Genome accession: NZ_LR134376
• Coordinates: 4057106..4057978 (+)
• Length: 290 a.a.
• NCBI ID: WP_042653209.1
• Uniprot ID: -
• Organism: Aeromonas encheleia strain NCTC12917
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4052106..4062978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL255_RS18760 (NCTC12917_03766)	nadC	4052315..4053172 (+)	858	WP_042653205.1	carboxylating nicotinate-nucleotide diphosphorylase	-
EL255_RS18770	-	4053494..4053919 (+)	426	WP_042653206.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
EL255_RS18775 (NCTC12917_03767)	pilB	4053923..4055629 (+)	1707	WP_042653207.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
EL255_RS18780 (NCTC12917_03768)	pilC	4055760..4057001 (+)	1242	WP_042653208.1	type II secretion system F family protein	Machinery gene
EL255_RS18785 (NCTC12917_03769)	pilD	4057106..4057978 (+)	873	WP_042653209.1	A24 family peptidase	Machinery gene
EL255_RS18790 (NCTC12917_03770)	coaE	4057997..4058611 (+)	615	WP_042653210.1	dephospho-CoA kinase	-
EL255_RS18795 (NCTC12917_03771)	zapD	4058649..4059371 (+)	723	WP_042653211.1	cell division protein ZapD	-
EL255_RS18800 (NCTC12917_03772)	yacG	4059388..4059582 (+)	195	WP_042653212.1	DNA gyrase inhibitor YacG	-
EL255_RS18805 (NCTC12917_03773)	mutT	4059639..4060046 (-)	408	WP_042653213.1	8-oxo-dGTP diphosphatase MutT	-
EL255_RS18810 (NCTC12917_03774)	-	4060055..4061239 (-)	1185	WP_042653214.1	M48 family metallopeptidase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32102.33 Da
• Isoelectric Point: 7.0809

>NTDB_id=1122448 EL255_RS18785 WP_042653209.1 4057106..4057978(+) (pilD) [Aeromonas encheleia strain NCTC12917]
MASLIELAHGLPWLYLSLMFLFSLMIGSFLNVVIHRLPIMLEREWHAEYRSYFDSDAEPAPTTPYNLMVPRSCCPHCDHP
IGALENIPLLSWLWLKGRCRQCRAPISVRYPLVELLTALLSLAVAATLAPGWGTLAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAAIGAWLGWQALPIVLLLSSL
IGALIGLTLIALRRHHQANPIPFGPYLAIAGWIALLWGDSITRWYLNTVL

Nucleotide

• Length: 873 bp

>NTDB_id=1122448 EL255_RS18785 WP_042653209.1 4057106..4057978(+) (pilD) [Aeromonas encheleia strain NCTC12917]
ATGGCGTCTCTGATCGAACTGGCCCACGGCCTGCCCTGGCTCTACCTCTCCCTGATGTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCACGCGGAATACCGCAGCTACTTCG
ACAGCGATGCCGAGCCCGCCCCCACCACGCCTTACAACCTGATGGTACCGCGCTCCTGCTGCCCTCACTGCGACCATCCC
ATCGGGGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGGCAGTGCCGGGCTCCCATCTC
GGTCCGTTATCCGCTGGTCGAATTGCTGACCGCCCTGCTGTCGTTGGCCGTCGCGGCGACCCTGGCCCCGGGCTGGGGCA
CCCTGGCCGCTTTGGCGCTGACCTGGGTGCTGGTCGCGCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCAGACCAG
CTCACCCTGCCACTGCTGTGGGGAGGCCTGCTGTTCAACCTGCTGGGCGGCTTCGTCTCGCTGGGAGATGCGGTGATCGG
GGCCATGGCCGGGTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAACTGCTCACCGGCAAGGAGGGAATGGGCTACG
GTGACTTCAAACTGCTGGCCGCCATCGGCGCCTGGCTGGGCTGGCAGGCTCTGCCCATAGTGCTGCTGCTCTCCTCCCTG
ATCGGCGCCCTGATCGGCCTCACGCTGATCGCCCTGCGTCGGCATCATCAAGCCAACCCTATTCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATCGCGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTGAACACCGTCCTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.649	98.276	0.586
pilD	Vibrio campbellii strain DS40M4	53.659	98.966	0.531
pilD	Acinetobacter nosocomialis M2	51.439	95.862	0.493
pilD	Acinetobacter baumannii D1279779	51.079	95.862	0.49
pilD	Neisseria gonorrhoeae MS11	49.81	90.69	0.452