Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   EL140_RS07740 Genome accession   NZ_LR134336
Coordinates   1532491..1532886 (-) Length   131 a.a.
NCBI ID   WP_000282459.1    Uniprot ID   A0A1X1GBD7
Organism   Streptococcus oralis ATCC 35037 strain NCTC 11427     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1527491..1537886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL140_RS07715 (NCTC11427_01524) recX 1527899..1528675 (+) 777 WP_000705072.1 recombination regulator RecX -
  EL140_RS07720 (NCTC11427_01525) - 1528764..1529297 (+) 534 WP_000775317.1 DUF402 domain-containing protein -
  EL140_RS07725 (NCTC11427_01526) - 1529368..1530135 (-) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  EL140_RS07730 (NCTC11427_01527) groL 1530260..1531882 (-) 1623 WP_000031548.1 chaperonin GroEL -
  EL140_RS07735 (NCTC11427_01528) groES 1531898..1532182 (-) 285 WP_000917326.1 co-chaperone GroES -
  EL140_RS07740 (NCTC11427_01529) ssbB/cilA 1532491..1532886 (-) 396 WP_000282459.1 single-stranded DNA-binding protein Machinery gene
  EL140_RS07745 (NCTC11427_01530) - 1532964..1533725 (-) 762 WP_001107788.1 SDR family NAD(P)-dependent oxidoreductase -
  EL140_RS07750 (NCTC11427_01531) ytpR 1533767..1534393 (-) 627 WP_000578274.1 YtpR family tRNA-binding protein -
  EL140_RS07755 (NCTC11427_01532) - 1534409..1534726 (-) 318 WP_000632591.1 thioredoxin family protein -
  EL140_RS07760 (NCTC11427_01533) - 1534723..1535022 (-) 300 WP_001013970.1 DUF4651 domain-containing protein -
  EL140_RS07770 (NCTC11427_01534) - 1535255..1536328 (-) 1074 Protein_1446 N-acetylmuramoyl-L-alanine amidase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14851.79 Da        Isoelectric Point: 5.9409

>NTDB_id=1121859 EL140_RS07740 WP_000282459.1 1532491..1532886(-) (ssbB/cilA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1121859 EL140_RS07740 WP_000282459.1 1532491..1532886(-) (ssbB/cilA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGTATAATAAAGTTATCATGATCGGGCGCTTGACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTGAATCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGACTTTGTCAATCTGGTTCTTT
GGGGAAAATTGGCTGAAACCTTAGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACTCGT
CGCTTCGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTCCTTGCCACAGGATTCCAACTTTTGGAAAGCCGCGCCCA
ACGGGCTATGCGTGAAAATAACGCAGGACAGGATTTGGCAGATTTGGTCTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GBD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae Rx1

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae D39

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae R6

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.183

100

0.962
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment