Detailed information NTG1121855

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EL140_RS06670
• Genome accession: NZ_LR134336
• Coordinates: 1332446..1332916 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609595.1
• Uniprot ID: A0A125YWP2
• Organism: Streptococcus oralis ATCC 35037 strain NCTC 11427
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1327446..1337916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL140_RS06645 (NCTC11427_01313)	-	1327530..1328840 (-)	1311	WP_000625486.1	glycosyltransferase family 2 protein	-
EL140_RS06650 (NCTC11427_01315)	-	1328983..1329762 (-)	780	WP_000800619.1	hypothetical protein	-
EL140_RS06655 (NCTC11427_01316)	wecB	1329769..1330917 (-)	1149	WP_000734440.1	non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase	-
EL140_RS06660 (NCTC11427_01317)	-	1331356..1331865 (-)	510	WP_002875475.1	GNAT family N-acetyltransferase	-
EL140_RS06665 (NCTC11427_01318)	rpsR	1332175..1332414 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
EL140_RS06670 (NCTC11427_01319)	ssbA	1332446..1332916 (-)	471	WP_000609595.1	single-stranded DNA-binding protein SsbA	Machinery gene
EL140_RS06675 (NCTC11427_01320)	rpsF	1332928..1333218 (-)	291	WP_001151782.1	30S ribosomal protein S6	-
EL140_RS06680 (NCTC11427_01321)	asnS	1333367..1334710 (-)	1344	WP_000167133.1	asparagine--tRNA ligase	-
EL140_RS06685 (NCTC11427_01322)	-	1334863..1336041 (-)	1179	WP_000777434.1	pyridoxal phosphate-dependent aminotransferase	-
EL140_RS06690 (NCTC11427_01323)	-	1336051..1336527 (-)	477	WP_000776857.1	DUF5590 domain-containing protein	-
EL140_RS06695 (NCTC11427_01324)	-	1336646..1337092 (+)	447	WP_000816316.1	MarR family winged helix-turn-helix transcriptional regulator	-
EL140_RS06700 (NCTC11427_01325)	-	1337184..1337732 (+)	549	WP_000039627.1	NADPH-dependent FMN reductase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17182.08 Da
• Isoelectric Point: 5.2065

>NTDB_id=1121855 EL140_RS06670 WP_000609595.1 1332446..1332916(-) (ssbA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRGVREGHSGGAYSAPTAGQSAPANPVPDFSRSENPFGATNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=1121855 EL140_RS06670 WP_000609595.1 1332446..1332916(-) (ssbA) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTGG
AGTGCGCGAAGGACATTCAGGTGGAGCTTATTCTGCACCAACTGCTGGCCAATCAGCACCTGCAAACCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGGAGCAACCAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A125YWP2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.233	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	52.841	100	0.596
ssb	Neisseria gonorrhoeae MS11	34.286	100	0.385
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssb	Neisseria meningitidis MC58	33.143	100	0.372
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.717	67.949	0.372