Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   EL115_RS08225 Genome accession   NZ_LR134307
Coordinates   1641311..1641706 (-) Length   131 a.a.
NCBI ID   WP_003070740.1    Uniprot ID   A0AAD2SVP3
Organism   Streptococcus milleri strain NCTC10708     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1636311..1646706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL115_RS08205 (NCTC10708_01626) - 1636751..1638037 (-) 1287 WP_126441761.1 ABC transporter substrate-binding protein -
  EL115_RS08210 (NCTC10708_01627) - 1638034..1638717 (-) 684 WP_003070735.1 response regulator transcription factor -
  EL115_RS08215 (NCTC10708_01628) - 1638710..1640023 (-) 1314 WP_126441762.1 sensor histidine kinase -
  EL115_RS08220 (NCTC10708_01629) - 1640023..1641009 (-) 987 WP_126441763.1 sugar ABC transporter substrate-binding protein -
  EL115_RS08225 (NCTC10708_01630) ssbB/cilA 1641311..1641706 (-) 396 WP_003070740.1 single-stranded DNA-binding protein Machinery gene
  EL115_RS08230 (NCTC10708_01631) ytpR 1641778..1642404 (-) 627 WP_003070743.1 YtpR family tRNA-binding protein -
  EL115_RS08235 (NCTC10708_01632) - 1642426..1642743 (-) 318 WP_003070744.1 thioredoxin family protein -
  EL115_RS08240 (NCTC10708_01633) - 1642740..1643027 (-) 288 WP_126441764.1 DUF4651 domain-containing protein -
  EL115_RS08245 (NCTC10708_01634) pepA 1643147..1644211 (+) 1065 WP_126441887.1 glutamyl aminopeptidase -
  EL115_RS08255 (NCTC10708_01635) - 1644627..1644959 (+) 333 WP_070668321.1 HIRAN domain-containing protein -
  EL115_RS08260 (NCTC10708_01636) - 1645334..1645894 (-) 561 WP_049476080.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14715.64 Da        Isoelectric Point: 5.9381

>NTDB_id=1120908 EL115_RS08225 WP_003070740.1 1641311..1641706(-) (ssbB/cilA) [Streptococcus milleri strain NCTC10708]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVIVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1120908 EL115_RS08225 WP_003070740.1 1641311..1641706(-) (ssbB/cilA) [Streptococcus milleri strain NCTC10708]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGTTAAATAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACGCTTGCTGTTAATCGCCGATATAAAGGACAAAATGGCGAGCGAGAAGCGGATTTTGTAAACGTCATTGTTT
GGGGCAAATTAGCCGAAACCTTAGCAAGTTATGCAACAAAAGGAAGCTTAATTTCTCTTGATGGAGAACTTCGTACTCGC
CGTTATGAGAAAGACGGTGTGACACATTATGTAACAGAAGTGCTTTGCAACGGCTTCCAGTTATTAGAAAGTCGTGCCCA
ACGAGCTCTTCGCGAGAATAATACAGGTGCAGACTTGGCAGATTTGGTTCTAGAAGAAGAGGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment