Detailed information NTG1120557

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: EL096_RS06820
• Genome accession: NZ_LR134294
• Coordinates: 1280486..1280881 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282442.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain NCTC12977
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1275486..1285881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL096_RS06790 (NCTC12977_01324)	-	1275631..1276164 (+)	534	WP_000775321.1	DUF402 domain-containing protein	-
EL096_RS06800 (NCTC12977_01325)	-	1276522..1276728 (-)	207	WP_000775827.1	transcriptional regulator	-
EL096_RS06805	-	1276889..1278195 (+)	1307	Protein_1275	transposase	-
EL096_RS06810 (NCTC12977_01328)	groL	1278294..1279916 (-)	1623	WP_000031575.1	chaperonin GroEL	-
EL096_RS06815 (NCTC12977_01329)	groES	1279932..1280216 (-)	285	WP_000917339.1	co-chaperone GroES	-
EL096_RS06820 (NCTC12977_01330)	ssbB/cilA	1280486..1280881 (-)	396	WP_000282442.1	single-stranded DNA-binding protein	Machinery gene
EL096_RS06825 (NCTC12977_01331)	-	1280959..1281720 (-)	762	WP_001107757.1	SDR family oxidoreductase	-
EL096_RS06830 (NCTC12977_01332)	ytpR	1281753..1282379 (-)	627	WP_000578285.1	YtpR family tRNA-binding protein	-
EL096_RS06835 (NCTC12977_01333)	-	1282395..1282712 (-)	318	WP_000615776.1	thioredoxin family protein	-
EL096_RS06840 (NCTC12977_01334)	-	1282709..1283008 (-)	300	WP_001818001.1	DUF4651 domain-containing protein	-
EL096_RS12045	-	1283102..1283233 (+)	132	WP_001811306.1	hypothetical protein	-
EL096_RS12200	-	1283345..1283540 (-)	196	Protein_1284	cell wall-binding protein	-
EL096_RS06850 (NCTC12977_01335)	-	1283701..1284375 (-)	675	WP_000725720.1	LiaF transmembrane domain-containing protein	-
EL096_RS06855 (NCTC12977_01336)	-	1284380..1284826 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
EL096_RS06860 (NCTC12977_01337)	-	1284940..1285443 (-)	504	WP_050221177.1	phosphatase PAP2 family protein	-
EL096_RS06865 (NCTC12977_01338)	-	1285440..1285802 (-)	363	WP_050221176.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14907.85 Da
• Isoelectric Point: 5.9409

>NTDB_id=1120557 EL096_RS06820 WP_000282442.1 1280486..1280881(-) (ssbB/cilA) [Streptococcus pneumoniae strain NCTC12977]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1120557 EL096_RS06820 WP_000282442.1 1280486..1280881(-) (ssbB/cilA) [Streptococcus pneumoniae strain NCTC12977]
ATGTATAATAAAGTTATCTTGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTAACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae D39	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae R6	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	99.237	100	0.992
ssbB/cilA	Streptococcus mitis NCTC 12261	97.71	100	0.977
ssbA	Streptococcus mutans UA159	75.573	100	0.756
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.992	100	0.71
ssbB	Lactococcus lactis subsp. cremoris KW2	60.714	85.496	0.519
ssbA	Bacillus subtilis subsp. subtilis str. 168	51.887	80.916	0.42
ssb	Latilactobacillus sakei subsp. sakei 23K	47.788	86.26	0.412
ssbB	Bacillus subtilis subsp. subtilis str. 168	44.444	82.443	0.366