Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | EL092_RS09485 | Genome accession | NZ_LR134291 |
| Coordinates | 1975420..1975815 (+) | Length | 131 a.a. |
| NCBI ID | WP_012130920.1 | Uniprot ID | A0AAQ4J6T1 |
| Organism | Streptococcus gordonii strain NCTC7868 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1970420..1980815
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL092_RS09460 (NCTC7868_01891) | - | 1971631..1972584 (-) | 954 | WP_012130915.1 | sugar ABC transporter substrate-binding protein | - |
| EL092_RS09465 (NCTC7868_01892) | pepA | 1972866..1973933 (-) | 1068 | WP_012130916.1 | glutamyl aminopeptidase | - |
| EL092_RS09470 (NCTC7868_01893) | - | 1974113..1974400 (+) | 288 | WP_012130917.1 | DUF4651 domain-containing protein | - |
| EL092_RS09475 (NCTC7868_01894) | - | 1974397..1974714 (+) | 318 | WP_012130918.1 | thioredoxin family protein | - |
| EL092_RS09480 (NCTC7868_01895) | ytpR | 1974731..1975357 (+) | 627 | WP_012130919.1 | YtpR family tRNA-binding protein | - |
| EL092_RS09485 (NCTC7868_01896) | ssbB/cilA | 1975420..1975815 (+) | 396 | WP_012130920.1 | single-stranded DNA-binding protein | Machinery gene |
| EL092_RS09490 (NCTC7868_01897) | - | 1975994..1977478 (+) | 1485 | WP_041789909.1 | DUF1846 domain-containing protein | - |
| EL092_RS09495 (NCTC7868_01898) | - | 1977532..1977966 (-) | 435 | WP_012130922.1 | hypothetical protein | - |
| EL092_RS10780 (NCTC7868_01899) | - | 1977976..1978140 (-) | 165 | WP_012130923.1 | hypothetical protein | - |
| EL092_RS09500 (NCTC7868_01900) | - | 1978137..1978340 (-) | 204 | WP_012130924.1 | helix-turn-helix transcriptional regulator | - |
| EL092_RS09510 (NCTC7868_01901) | - | 1978637..1979674 (-) | 1038 | WP_012130925.1 | sensor histidine kinase | - |
| EL092_RS09515 (NCTC7868_01902) | - | 1979641..1980339 (-) | 699 | WP_012130926.1 | response regulator transcription factor | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14766.59 Da Isoelectric Point: 6.2466
>NTDB_id=1120386 EL092_RS09485 WP_012130920.1 1975420..1975815(+) (ssbB/cilA) [Streptococcus gordonii strain NCTC7868]
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRYKDQNGEREADFINIVLWGKSAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF
MYNKVIIIGRLTATPELHKTSNEKSVTRATIAVNRRYKDQNGEREADFINIVLWGKSAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLGHGFQLLESRAQRAIRENNSGADLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1120386 EL092_RS09485 WP_012130920.1 1975420..1975815(+) (ssbB/cilA) [Streptococcus gordonii strain NCTC7868]
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACGATTGCTGTCAACCGCCGTTACAAGGATCAAAATGGTGAGCGCGAAGCAGACTTCATTAATATCGTCCTTT
GGGGCAAATCAGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTAATTTCTCTGGACGGCGAATTACGGACCCGT
CGTTATGAGAAAGATGGCGTAACTCACTATGTCACAGAAGTGCTTGGTCATGGTTTCCAACTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGGGCTGATTTAGCTGATCTAGTCTTGGAAGAAGAGGAACTTCCTTTCTAA
ATGTACAATAAAGTCATTATTATCGGTCGTTTGACGGCCACACCAGAATTGCACAAAACTAGCAATGAAAAATCTGTCAC
ACGCGCAACGATTGCTGTCAACCGCCGTTACAAGGATCAAAATGGTGAGCGCGAAGCAGACTTCATTAATATCGTCCTTT
GGGGCAAATCAGCTGAGACTCTAGCTAGTTATGCCAGCAAAGGAAGCTTAATTTCTCTGGACGGCGAATTACGGACCCGT
CGTTATGAGAAAGATGGCGTAACTCACTATGTCACAGAAGTGCTTGGTCATGGTTTCCAACTTCTTGAAAGTCGTGCCCA
GCGGGCTATTCGTGAAAATAATTCTGGGGCTGATTTAGCTGATCTAGTCTTGGAAGAAGAGGAACTTCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus mitis SK321 |
83.206 |
100 |
0.832 |
| ssbA | Streptococcus mutans UA159 |
80.153 |
100 |
0.802 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
74.046 |
100 |
0.74 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
63.393 |
85.496 |
0.542 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.943 |
80.916 |
0.412 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.057 |
80.916 |
0.397 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
44.444 |
82.443 |
0.366 |