Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EL191_RS04515 Genome accession   NZ_LR134290
Coordinates   992157..993377 (-) Length   406 a.a.
NCBI ID   WP_041976797.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NCTC10897     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 987157..998377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL191_RS04475 (NCTC10897_00899) - 987368..987541 (-) 174 WP_013714021.1 DUF3094 family protein -
  EL191_RS04480 (NCTC10897_00900) - 987748..988302 (-) 555 WP_041976784.1 MOSC domain-containing protein -
  EL191_RS04485 (NCTC10897_00901) - 988299..988928 (-) 630 WP_013714023.1 DUF1780 domain-containing protein -
  EL191_RS04490 (NCTC10897_00902) - 989137..989826 (+) 690 WP_041976787.1 energy-coupling factor ABC transporter permease -
  EL191_RS04495 (NCTC10897_00903) - 989932..990147 (+) 216 WP_041976790.1 hypothetical protein -
  EL191_RS04500 (NCTC10897_00904) yacG 990218..990412 (-) 195 WP_013714026.1 DNA gyrase inhibitor YacG -
  EL191_RS04505 (NCTC10897_00905) coaE 990409..991017 (-) 609 WP_041976792.1 dephospho-CoA kinase -
  EL191_RS04510 (NCTC10897_00906) pilD 991287..992153 (-) 867 WP_162184340.1 A24 family peptidase Machinery gene
  EL191_RS04515 (NCTC10897_00907) pilC 992157..993377 (-) 1221 WP_041976797.1 type II secretion system F family protein Machinery gene
  EL191_RS04520 (NCTC10897_00908) pilB 993381..995081 (-) 1701 WP_041976801.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EL191_RS24645 (NCTC10897_00909) pilA 995356..995541 (+) 186 WP_041976804.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL191_RS04530 - 995559..996011 (+) 453 WP_126403455.1 hypothetical protein -
  EL191_RS04535 (NCTC10897_00910) - 996094..996903 (+) 810 WP_041976806.1 hypothetical protein -
  EL191_RS04540 (NCTC10897_00911) - 996866..997744 (+) 879 WP_230926001.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43993.64 Da        Isoelectric Point: 9.7131

>NTDB_id=1120313 EL191_RS04515 WP_041976797.1 992157..993377(-) (pilC) [Ectopseudomonas mendocina strain NCTC10897]
MAEKALKTSVFAWEGTDRKGGKVKGELSGQSPALVKAQLRKQGINPIKVRKKAVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKLIDEVKQEVAAGNSFASALRKKPLYFDDLYCNLVDSGEQSGALETLLDRIATYKEKT
ESLKAKIKKAMTYPIAVIVVALIVTAILLIKVVPQFESVFQGFGAELPAFTQVVVDLSRGLQNWWFVVLGGIFAAAFIFS
NTYKRSEKFRDALDRALLKAPIIGDILYKAVVARFARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVHKIKVDVSSGT
QLNFAMRSTGIFPTMAVQMTAIGEEAGSLDEMLDKTASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIVAMYLPIFQ
LGAVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1120313 EL191_RS04515 WP_041976797.1 992157..993377(-) (pilC) [Ectopseudomonas mendocina strain NCTC10897]
ATGGCGGAAAAAGCACTGAAAACCAGCGTGTTCGCCTGGGAAGGCACCGATAGAAAGGGTGGCAAGGTAAAGGGCGAGCT
CAGTGGGCAATCGCCGGCCCTAGTCAAGGCTCAACTGCGCAAGCAGGGTATCAACCCGATCAAAGTGCGCAAGAAAGCGG
TTTCATTGTTTGGCGCGGGCAAGAAAATCAAGCCGATGGACATTGCCCTGTTCACCCGGCAAATGGCAACTATGATGAAG
GCCGGCGTACCGTTGTTGCAGTCCTTCGACATCATCGCTGAGGGTTTCGACAACCCCAATATGCGCAAGCTGATCGATGA
GGTTAAGCAGGAAGTTGCGGCCGGTAACAGCTTCGCTTCCGCACTACGCAAAAAACCGCTGTATTTCGACGACCTATATT
GCAACCTGGTCGACTCCGGCGAACAGTCCGGCGCGCTGGAGACCTTGCTGGATCGTATTGCCACCTACAAGGAAAAAACC
GAATCCCTGAAAGCAAAGATCAAGAAGGCAATGACCTACCCGATTGCTGTGATCGTGGTCGCGCTCATCGTGACAGCCAT
TCTACTGATCAAGGTAGTACCTCAGTTCGAATCGGTATTCCAGGGTTTTGGTGCGGAGTTACCAGCCTTCACCCAAGTGG
TCGTAGATCTATCACGCGGCCTGCAAAATTGGTGGTTCGTGGTGCTGGGCGGGATATTCGCCGCCGCATTCATTTTTTCC
AACACATACAAGCGTTCGGAAAAATTTCGCGACGCTCTGGATAGGGCACTGCTCAAGGCTCCAATCATTGGCGACATTCT
GTACAAGGCCGTGGTTGCACGCTTTGCCCGCACCCTCGCCACGACTTTTGCCGCTGGCGTGCCACTGGTCGACGCACTCG
ACTCGGTAGCCGGCGCCACCGGCAACGTGGTTTTCCGCAACGCCGTACACAAGATCAAAGTGGACGTGTCTTCGGGTACT
CAACTGAACTTCGCCATGCGCAGCACCGGCATCTTCCCCACTATGGCCGTGCAAATGACAGCTATCGGCGAAGAAGCCGG
CTCGCTGGACGAAATGCTTGACAAGACCGCCAGTTACTACGAAGAAGAAGTAGACAACGCCGTAGACAACCTCACTACCC
TGATGGAACCAATGATCATGGCTGTGCTTGGGGTACTGGTTGGTGGCCTTATCGTGGCGATGTATCTGCCTATCTTCCAG
CTGGGTGCGGTGGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.753

99.754

0.796
  pilC Acinetobacter baylyi ADP1

61.823

100

0.618
  pilC Acinetobacter baumannii D1279779

60.494

99.754

0.603
  pilC Legionella pneumophila strain ERS1305867

53.788

97.537

0.525
  pilG Neisseria gonorrhoeae MS11

45.522

99.015

0.451
  pilG Neisseria meningitidis 44/76-A

45.522

99.015

0.451
  pilC Vibrio cholerae strain A1552

43.35

100

0.434
  pilC Vibrio campbellii strain DS40M4

41.96

98.03

0.411
  pilC Thermus thermophilus HB27

36.476

99.261

0.362

Multiple sequence alignment