Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   EL087_RS01120 Genome accession   NZ_LR134288
Coordinates   213533..213928 (+) Length   131 a.a.
NCBI ID   WP_003028522.1    Uniprot ID   A0AAI9NIC2
Organism   Streptococcus milleri strain NCTC11169     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 208533..218928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL087_RS01090 (NCTC11169_00213) - 208920..210224 (+) 1305 WP_126406265.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  EL087_RS01095 (NCTC11169_00215) - 210402..210962 (+) 561 WP_003039137.1 folate family ECF transporter S component -
  EL087_RS01100 (NCTC11169_00216) pepA 211024..212088 (-) 1065 WP_126406267.1 glutamyl aminopeptidase -
  EL087_RS01105 (NCTC11169_00217) - 212208..212495 (+) 288 WP_126406270.1 DUF4651 domain-containing protein -
  EL087_RS01110 (NCTC11169_00218) - 212492..212809 (+) 318 WP_126406273.1 thioredoxin family protein -
  EL087_RS01115 (NCTC11169_00219) ytpR 212826..213452 (+) 627 WP_126406276.1 YtpR family tRNA-binding protein -
  EL087_RS01120 (NCTC11169_00220) ssbB/cilA 213533..213928 (+) 396 WP_003028522.1 single-stranded DNA-binding protein Machinery gene
  EL087_RS01125 (NCTC11169_00221) - 214221..215207 (+) 987 WP_126406279.1 sugar ABC transporter substrate-binding protein -
  EL087_RS01130 (NCTC11169_00222) - 215207..216520 (+) 1314 WP_126406282.1 sensor histidine kinase -
  EL087_RS01135 (NCTC11169_00223) - 216513..217196 (+) 684 WP_126406285.1 response regulator transcription factor -
  EL087_RS01140 (NCTC11169_00224) - 217193..218479 (+) 1287 WP_126406288.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14671.59 Da        Isoelectric Point: 5.9381

>NTDB_id=1120239 EL087_RS01120 WP_003028522.1 213533..213928(+) (ssbB/cilA) [Streptococcus milleri strain NCTC11169]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYASKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNAGADLADLLLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1120239 EL087_RS01120 WP_003028522.1 213533..213928(+) (ssbB/cilA) [Streptococcus milleri strain NCTC11169]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAGTTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCGGTCAATCGTCGCTACAAAGGACAAAATGGTGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT
GGGGCAAGTTAGCCGAAACATTGGCAAGTTATGCAAGTAAAGGCAGCTTGATTTCACTAGACGGCGAACTTCGCACTCGC
CGCTATGAGAAGGACGGAGTGACGCATTATGTCACAGAAGTGCTTTGCAATGGTTTCCAGCTATTAGAAAGCCGTGCACA
GCGAGCTCTTCGTGAGAATAATGCAGGTGCAGACTTGGCAGATTTGCTTCTGGAAGAAGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

83.969

100

0.84
  ssbB/cilA Streptococcus mitis NCTC 12261

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae Rx1

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae D39

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae R6

83.206

100

0.832
  ssbB/cilA Streptococcus mitis SK321

83.206

100

0.832
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374

Multiple sequence alignment