Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   EL100_RS02600 Genome accession   NZ_LR134285
Coordinates   510418..510813 (-) Length   131 a.a.
NCBI ID   WP_061564657.1    Uniprot ID   A0A127TUN4
Organism   Streptococcus australis strain NCTC3168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 505418..515813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL100_RS02580 (NCTC3168_00533) - 505906..507213 (-) 1308 WP_126403680.1 ABC transporter substrate-binding protein -
  EL100_RS02585 (NCTC3168_00534) - 507210..507896 (-) 687 WP_006595115.1 response regulator transcription factor -
  EL100_RS02590 (NCTC3168_00535) - 507893..509212 (-) 1320 WP_126403679.1 sensor histidine kinase -
  EL100_RS02595 (NCTC3168_00536) - 509212..510198 (-) 987 WP_126403678.1 substrate-binding domain-containing protein -
  EL100_RS02600 (NCTC3168_00537) ssbB/cilA 510418..510813 (-) 396 WP_061564657.1 single-stranded DNA-binding protein Machinery gene
  EL100_RS02605 (NCTC3168_00538) ytpR 511050..511676 (-) 627 WP_126403677.1 YtpR family tRNA-binding protein -
  EL100_RS02610 (NCTC3168_00539) - 511691..512008 (-) 318 WP_126403676.1 thioredoxin family protein -
  EL100_RS02615 (NCTC3168_00540) - 512005..512295 (-) 291 WP_126403675.1 DUF4651 domain-containing protein -
  EL100_RS02620 (NCTC3168_00541) pepA 512442..513506 (+) 1065 WP_126403674.1 glutamyl aminopeptidase -
  EL100_RS02625 (NCTC3168_00542) - 513665..515149 (+) 1485 WP_126403673.1 DUF1846 domain-containing protein -
  EL100_RS02630 (NCTC3168_00543) - 515259..515414 (-) 156 WP_164555426.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14647.63 Da        Isoelectric Point: 5.9328

>NTDB_id=1120157 EL100_RS02600 WP_061564657.1 510418..510813(-) (ssbB/cilA) [Streptococcus australis strain NCTC3168]
MYNKVILIGRLVADPELHKTSTDKSVARATLAVNRRYKDQNGEREADFITLVVWGKLAETLVSYANKGSLLSVDGELRTR
RYEKNGATQYVTEVLCQGFQLLESRAQRAMRANGAGGDLADLILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1120157 EL100_RS02600 WP_061564657.1 510418..510813(-) (ssbB/cilA) [Streptococcus australis strain NCTC3168]
ATGTACAATAAAGTAATTTTAATCGGGCGTCTAGTGGCTGATCCGGAGCTTCATAAGACCAGTACGGACAAGTCTGTTGC
GCGTGCGACCCTGGCTGTCAATCGACGTTACAAGGATCAAAATGGCGAGCGTGAGGCGGACTTTATCACCCTAGTGGTCT
GGGGGAAATTAGCAGAGACCCTTGTATCCTATGCCAACAAGGGGAGCTTGCTCTCAGTAGATGGCGAGCTTCGAACCAGA
CGTTATGAGAAGAATGGGGCGACCCAATATGTGACAGAAGTGCTCTGTCAAGGCTTCCAGCTCTTAGAAAGTCGCGCTCA
ACGAGCGATGCGGGCTAATGGAGCAGGAGGAGATTTAGCGGATCTGATCCTCGAAGAGGAAGAGCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127TUN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae D39

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

80.916

100

0.809
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.809
  ssbB/cilA Streptococcus mitis SK321

80.916

100

0.809
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.909

83.969

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

48.214

85.496

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment