Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL070_RS04210 | Genome accession | NZ_LR134284 |
| Coordinates | 804996..805415 (+) | Length | 139 a.a. |
| NCBI ID | WP_111677307.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain NCTC8232 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 794130..843504 | 804996..805415 | within | 0 |
Gene organization within MGE regions
Location: 794130..843504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL070_RS04120 (NCTC8232_00814) | - | 794130..794750 (-) | 621 | WP_002989605.1 | DUF3862 domain-containing protein | - |
| EL070_RS04125 (NCTC8232_00815) | - | 795025..796113 (-) | 1089 | WP_038433317.1 | site-specific integrase | - |
| EL070_RS04130 (NCTC8232_00817) | - | 796363..797172 (-) | 810 | WP_002984270.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| EL070_RS04135 (NCTC8232_00818) | - | 797185..798009 (-) | 825 | WP_038433318.1 | XRE family transcriptional regulator | - |
| EL070_RS10015 (NCTC8232_00819) | - | 798365..798514 (+) | 150 | WP_021340643.1 | hypothetical protein | - |
| EL070_RS04140 (NCTC8232_00820) | - | 798500..798715 (-) | 216 | WP_021341080.1 | hypothetical protein | - |
| EL070_RS04145 (NCTC8232_00821) | - | 798774..798932 (+) | 159 | WP_080286776.1 | hypothetical protein | - |
| EL070_RS04150 (NCTC8232_00822) | - | 799031..799672 (-) | 642 | WP_001008979.1 | hypothetical protein | - |
| EL070_RS04155 (NCTC8232_00823) | - | 799724..799924 (+) | 201 | WP_038433319.1 | helix-turn-helix domain-containing protein | - |
| EL070_RS04160 (NCTC8232_00824) | - | 800056..800295 (-) | 240 | WP_011284879.1 | hypothetical protein | - |
| EL070_RS04165 (NCTC8232_00825) | - | 800462..800647 (+) | 186 | WP_011054585.1 | helix-turn-helix domain-containing protein | - |
| EL070_RS04170 (NCTC8232_00826) | - | 800726..801022 (+) | 297 | WP_011017882.1 | MerR family transcriptional regulator | - |
| EL070_RS10330 (NCTC8232_00827) | - | 801019..801153 (+) | 135 | WP_002995985.1 | hypothetical protein | - |
| EL070_RS04175 (NCTC8232_00828) | - | 801169..801483 (+) | 315 | WP_023610888.1 | helix-turn-helix domain-containing protein | - |
| EL070_RS04180 (NCTC8232_00829) | - | 801497..802327 (+) | 831 | WP_009881060.1 | phage replisome organizer N-terminal domain-containing protein | - |
| EL070_RS04185 (NCTC8232_00830) | - | 802314..803096 (+) | 783 | WP_111705650.1 | ATP-binding protein | - |
| EL070_RS04190 (NCTC8232_00832) | - | 803237..803590 (+) | 354 | WP_011285579.1 | hypothetical protein | - |
| EL070_RS04195 (NCTC8232_00833) | - | 803571..803825 (+) | 255 | WP_111677309.1 | hypothetical protein | - |
| EL070_RS04200 (NCTC8232_00834) | - | 803846..804328 (+) | 483 | WP_021341163.1 | siphovirus Gp157 family protein | - |
| EL070_RS04205 (NCTC8232_00835) | - | 804329..805003 (+) | 675 | WP_111677308.1 | ERF family protein | - |
| EL070_RS04210 (NCTC8232_00836) | ssbA | 804996..805415 (+) | 420 | WP_111677307.1 | single-stranded DNA-binding protein | Machinery gene |
| EL070_RS04215 | - | 805421..805624 (+) | 204 | WP_011106686.1 | hypothetical protein | - |
| EL070_RS04220 (NCTC8232_00837) | - | 805624..806064 (+) | 441 | WP_011018139.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EL070_RS04225 (NCTC8232_00838) | - | 806061..806417 (+) | 357 | WP_111677305.1 | hypothetical protein | - |
| EL070_RS10420 (NCTC8232_00839) | - | 806414..806659 (+) | 246 | WP_111677304.1 | hypothetical protein | - |
| EL070_RS04235 (NCTC8232_00840) | - | 806659..806946 (+) | 288 | WP_023078268.1 | nucleotide modification associated domain-containing protein | - |
| EL070_RS04240 (NCTC8232_00841) | - | 806930..807343 (+) | 414 | WP_111677303.1 | YopX family protein | - |
| EL070_RS10020 (NCTC8232_00842) | - | 807340..807510 (+) | 171 | WP_011018135.1 | hypothetical protein | - |
| EL070_RS04245 (NCTC8232_00843) | - | 807507..807791 (+) | 285 | WP_111677589.1 | hypothetical protein | - |
| EL070_RS04250 (NCTC8232_00844) | - | 807796..807996 (+) | 201 | WP_032465979.1 | hypothetical protein | - |
| EL070_RS04255 (NCTC8232_00845) | - | 808009..808401 (+) | 393 | WP_111705648.1 | hypothetical protein | - |
| EL070_RS04260 (NCTC8232_00846) | - | 808401..809036 (+) | 636 | WP_002987471.1 | N-6 DNA methylase | - |
| EL070_RS04265 (NCTC8232_00847) | - | 809307..809747 (+) | 441 | WP_111677301.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| EL070_RS04270 (NCTC8232_00848) | - | 810316..810747 (+) | 432 | WP_023079766.1 | terminase small subunit | - |
| EL070_RS04275 (NCTC8232_00849) | - | 810725..812032 (+) | 1308 | WP_111677299.1 | PBSX family phage terminase large subunit | - |
| EL070_RS04280 (NCTC8232_00850) | - | 812044..813546 (+) | 1503 | WP_126405114.1 | phage portal protein | - |
| EL070_RS04285 (NCTC8232_00851) | - | 813527..815152 (+) | 1626 | WP_126405115.1 | phage minor head protein | - |
| EL070_RS04290 (NCTC8232_00852) | - | 815143..815322 (+) | 180 | WP_010922213.1 | hypothetical protein | - |
| EL070_RS04295 (NCTC8232_00853) | - | 815431..815651 (+) | 221 | Protein_767 | hypothetical protein | - |
| EL070_RS04300 (NCTC8232_00854) | - | 815747..815926 (+) | 180 | WP_011017861.1 | hypothetical protein | - |
| EL070_RS04305 (NCTC8232_00855) | - | 816041..816211 (+) | 171 | WP_232013159.1 | hypothetical protein | - |
| EL070_RS04310 (NCTC8232_00856) | - | 816290..817032 (+) | 743 | Protein_770 | phage antirepressor KilAC domain-containing protein | - |
| EL070_RS04315 (NCTC8232_00857) | - | 817144..817677 (+) | 534 | WP_111705645.1 | DUF4355 domain-containing protein | - |
| EL070_RS04320 (NCTC8232_00858) | - | 817687..818067 (+) | 381 | WP_002984386.1 | phage protein | - |
| EL070_RS04325 (NCTC8232_00859) | - | 818067..819143 (+) | 1077 | WP_002984388.1 | major capsid protein | - |
| EL070_RS04330 (NCTC8232_00860) | - | 819153..819395 (+) | 243 | WP_002984390.1 | HeH/LEM domain-containing protein | - |
| EL070_RS04335 (NCTC8232_00861) | - | 819409..819762 (+) | 354 | WP_002984392.1 | phage head-tail connector protein | - |
| EL070_RS04340 (NCTC8232_00862) | - | 819759..820067 (+) | 309 | WP_002984393.1 | hypothetical protein | - |
| EL070_RS04345 (NCTC8232_00863) | - | 820048..820413 (+) | 366 | WP_002984399.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| EL070_RS04350 (NCTC8232_00864) | - | 820410..820799 (+) | 390 | WP_002984401.1 | hypothetical protein | - |
| EL070_RS04355 (NCTC8232_00865) | - | 820854..821456 (+) | 603 | WP_002984403.1 | phage major tail protein, TP901-1 family | - |
| EL070_RS04360 (NCTC8232_00866) | - | 821509..821868 (+) | 360 | WP_002984405.1 | tail assembly chaperone | - |
| EL070_RS10185 (NCTC8232_00867) | - | 821943..822149 (+) | 207 | WP_232013161.1 | hypothetical protein | - |
| EL070_RS04370 (NCTC8232_00869) | - | 822256..825522 (+) | 3267 | WP_047235256.1 | tape measure protein | - |
| EL070_RS04375 (NCTC8232_00870) | - | 825554..826333 (+) | 780 | WP_002984411.1 | distal tail protein Dit | - |
| EL070_RS04380 (NCTC8232_00871) | - | 826330..828366 (+) | 2037 | WP_111705643.1 | phage tail spike protein | - |
| EL070_RS04385 (NCTC8232_00872) | - | 828363..829370 (+) | 1008 | WP_111705642.1 | hyaluronoglucosaminidase | - |
| EL070_RS04390 (NCTC8232_00873) | - | 829383..831293 (+) | 1911 | WP_002987337.1 | gp58-like family protein | - |
| EL070_RS04395 (NCTC8232_00874) | - | 831307..831468 (+) | 162 | WP_002987333.1 | hypothetical protein | - |
| EL070_RS04400 (NCTC8232_00875) | - | 831471..832088 (+) | 618 | WP_047235258.1 | DUF1366 domain-containing protein | - |
| EL070_RS04405 (NCTC8232_00876) | - | 832098..832373 (+) | 276 | WP_002987582.1 | hypothetical protein | - |
| EL070_RS04410 (NCTC8232_00877) | - | 832370..832597 (+) | 228 | WP_003058873.1 | phage holin | - |
| EL070_RS04415 (NCTC8232_00879) | - | 832713..833918 (+) | 1206 | Protein_791 | glucosaminidase domain-containing protein | - |
| EL070_RS04420 (NCTC8232_00880) | - | 833988..834422 (-) | 435 | WP_011017966.1 | hypothetical protein | - |
| EL070_RS04425 (NCTC8232_00881) | sda3 | 834694..835494 (-) | 801 | WP_011285611.1 | streptodornase Sda3 | - |
| EL070_RS04430 (NCTC8232_00882) | prx | 835732..835920 (+) | 189 | WP_032461628.1 | hypothetical protein | Regulator |
| EL070_RS04440 (NCTC8232_00884) | - | 836511..837125 (+) | 615 | WP_002989607.1 | TVP38/TMEM64 family protein | - |
| EL070_RS04445 (NCTC8232_00885) | - | 837252..838037 (-) | 786 | WP_002984433.1 | hypothetical protein | - |
| EL070_RS04450 (NCTC8232_00886) | - | 838047..838745 (-) | 699 | WP_002984437.1 | ABC transporter ATP-binding protein | - |
| EL070_RS04455 (NCTC8232_00887) | - | 838745..839116 (-) | 372 | WP_002989617.1 | GntR family transcriptional regulator | - |
| EL070_RS04460 (NCTC8232_00888) | - | 839301..842411 (+) | 3111 | WP_111705640.1 | DNA polymerase III subunit alpha | - |
| EL070_RS04465 (NCTC8232_00889) | pfkA | 842491..843504 (+) | 1014 | WP_002984444.1 | 6-phosphofructokinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15664.34 Da Isoelectric Point: 4.8779
>NTDB_id=1120106 EL070_RS04210 WP_111677307.1 804996..805415(+) (ssbA) [Streptococcus pyogenes strain NCTC8232]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAESFQMLESRNQQSGQGNSSQNDNSQPFGNSNPMDISDDDLPF
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAESFQMLESRNQQSGQGNSSQNDNSQPFGNSNPMDISDDDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=1120106 EL070_RS04210 WP_111677307.1 804996..805415(+) (ssbA) [Streptococcus pyogenes strain NCTC8232]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATCTGGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACAGGTCGTATCCAGACACGC
AACTACGAAAACCAACAAGGTCAACGCGTATATGTAACAGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGCAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATATTTCAG
ATGATGATCTGCCGTTTTAA
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATCTGGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACAGGTCGTATCCAGACACGC
AACTACGAAAACCAACAAGGTCAACGCGTATATGTAACAGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGCAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATATTTCAG
ATGATGATCTGCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.857 |
100 |
0.691 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.529 |
100 |
0.655 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.604 |
100 |
0.446 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.604 |
100 |
0.446 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.885 |
100 |
0.439 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.885 |
100 |
0.439 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.885 |
100 |
0.439 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.885 |
100 |
0.439 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.885 |
100 |
0.439 |
| ssbA | Streptococcus mutans UA159 |
41.727 |
100 |
0.417 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.252 |
79.856 |
0.417 |
| ssb | Vibrio cholerae strain A1552 |
31.214 |
100 |
0.388 |