Detailed information NTG1118625

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: EL050_RS19880
• Genome accession: NZ_LR134165
• Coordinates: 3937238..3937585 (-)
• Length: 115 a.a.
• NCBI ID: WP_025810666.1
• Uniprot ID: -
• Organism: Bacillus paralicheniformis strain NCTC8721
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3932238..3942585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL050_RS19850 (NCTC8721_04096)	srlD	3932851..3933636 (-)	786	WP_023857135.1	sorbitol-6-phosphate dehydrogenase	-
EL050_RS19855 (NCTC8721_04097)	-	3933651..3934022 (-)	372	WP_020453199.1	PTS glucitol/sorbitol transporter subunit IIA	-
EL050_RS19860 (NCTC8721_04098)	-	3934046..3935053 (-)	1008	WP_020453200.1	PTS glucitol/sorbitol transporter subunit IIB	-
EL050_RS19865 (NCTC8721_04099)	-	3935070..3935618 (-)	549	WP_020453201.1	PTS glucitol/sorbitol transporter subunit IIC	-
EL050_RS19870 (NCTC8721_04100)	-	3935615..3936058 (-)	444	WP_020453202.1	transcriptional regulator GutM	-
EL050_RS19875 (NCTC8721_04101)	-	3936055..3937017 (-)	963	WP_020453203.1	sugar-binding transcriptional regulator	-
EL050_RS19880 (NCTC8721_04102)	ssbB	3937238..3937585 (-)	348	WP_025810666.1	single-stranded DNA-binding protein	Machinery gene
EL050_RS19885 (NCTC8721_04103)	-	3937690..3938061 (-)	372	WP_023857133.1	hypothetical protein	-
EL050_RS19890 (NCTC8721_04104)	-	3938243..3938656 (+)	414	WP_020453206.1	YwpF-like family protein	-
EL050_RS19895 (NCTC8721_04105)	mscL	3938696..3939076 (-)	381	WP_023857132.1	large conductance mechanosensitive channel protein MscL	-
EL050_RS19900 (NCTC8721_04106)	fabZ	3939147..3939581 (-)	435	WP_003185902.1	3-hydroxyacyl-ACP dehydratase FabZ	-
EL050_RS19905 (NCTC8721_04107)	-	3939763..3940590 (-)	828	WP_023857130.1	flagellar hook-basal body protein	-
EL050_RS19910 (NCTC8721_04108)	-	3940634..3941473 (-)	840	WP_023857129.1	flagellar hook-basal body protein	-

Sequence

Protein

• Length: 115 a.a.
• Molecular weight: 12765.50 Da
• Isoelectric Point: 6.9538

>NTDB_id=1118625 EL050_RS19880 WP_025810666.1 3937238..3937585(-) (ssbB) [Bacillus paralicheniformis strain NCTC8721]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEIEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERVFITEVVARSVRFLGESRKAHEPADA

Nucleotide

• Length: 348 bp

>NTDB_id=1118625 EL050_RS19880 WP_025810666.1 3937238..3937585(-) (ssbB) [Bacillus paralicheniformis strain NCTC8721]
ATGTTTAATGAGATCATGCTGGTCGGGCGTTTGACAAAAGATCCCGAACTTCGGTACACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAAAATGCAGCAGGCGAAATTGAAGCGGACTTTGTCAATTGCACCCTGT
GGCGCAAAACTGCCGTGAATACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACTCGC
CAATACGTCAATTCAGAAGGCGAACGCGTCTTTATTACAGAAGTTGTCGCCCGATCAGTCAGATTTTTGGGAGAAAGCCG
AAAAGCCCATGAGCCGGCGGATGCTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Bacillus subtilis subsp. subtilis str. 168	72.816	89.565	0.652
ssbA	Bacillus subtilis subsp. subtilis str. 168	60.194	89.565	0.539
ssb	Latilactobacillus sakei subsp. sakei 23K	52.252	96.522	0.504
ssbA	Streptococcus mutans UA159	45.794	93.043	0.426
ssbB	Lactococcus lactis subsp. cremoris KW2	44.34	92.174	0.409
ssbB	Streptococcus sobrinus strain NIDR 6715-7	43.925	93.043	0.409
ssbB/cilA	Streptococcus mitis NCTC 12261	42.991	93.043	0.4
ssbB/cilA	Streptococcus pneumoniae TIGR4	42.991	93.043	0.4
ssbB/cilA	Streptococcus pneumoniae Rx1	42.056	93.043	0.391
ssbB/cilA	Streptococcus pneumoniae D39	42.056	93.043	0.391
ssbB/cilA	Streptococcus pneumoniae R6	42.056	93.043	0.391
ssbB/cilA	Streptococcus mitis SK321	42.056	93.043	0.391