Detailed information NTG1117842

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: ELZ47_RS10775
• Genome accession: NZ_LR134002
• Coordinates: 2168739..2169173 (-)
• Length: 144 a.a.
• NCBI ID: WP_164549615.1
• Uniprot ID: A0AAJ5NJ08
• Organism: Streptococcus sanguinis strain NCTC 10904
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2163739..2174173

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ELZ47_RS10740 (NCTC10904_02111)	-	2163760..2164398 (-)	639	WP_126435997.1	CAAX protease family protein	-
ELZ47_RS10745 (NCTC10904_02112)	-	2164516..2165265 (-)	750	WP_164549614.1	CPBP family intramembrane glutamic endopeptidase	-
ELZ47_RS10750 (NCTC10904_02113)	-	2165409..2166602 (-)	1194	WP_126435999.1	acetate kinase	-
ELZ47_RS10755 (NCTC10904_02114)	comYH	2166639..2167604 (-)	966	WP_126436000.1	class I SAM-dependent methyltransferase	Machinery gene
ELZ47_RS10760 (NCTC10904_02115)	comGG	2167686..2168078 (-)	393	WP_126436001.1	competence type IV pilus minor pilin ComGG	-
ELZ47_RS10765 (NCTC10904_02116)	comGF/cglF	2168059..2168496 (-)	438	WP_126436002.1	competence type IV pilus minor pilin ComGF	Machinery gene
ELZ47_RS10770 (NCTC10904_02117)	comGE/cglE	2168480..2168773 (-)	294	WP_126436003.1	competence type IV pilus minor pilin ComGE	Machinery gene
ELZ47_RS10775 (NCTC10904_02118)	comYD	2168739..2169173 (-)	435	WP_164549615.1	competence type IV pilus minor pilin ComGD	Machinery gene
ELZ47_RS10780 (NCTC10904_02119)	comYC	2169133..2169450 (-)	318	WP_002896769.1	competence type IV pilus major pilin ComGC	Machinery gene
ELZ47_RS10785 (NCTC10904_02120)	comYB	2169450..2170484 (-)	1035	WP_269460457.1	competence type IV pilus assembly protein ComGB	Machinery gene
ELZ47_RS10790 (NCTC10904_02121)	comYA	2170414..2171355 (-)	942	WP_126436006.1	competence type IV pilus ATPase ComGA	Machinery gene
ELZ47_RS10795 (NCTC10904_02122)	-	2171485..2171865 (-)	381	WP_126436007.1	DUF1033 family protein	-
ELZ47_RS10800 (NCTC10904_02123)	-	2172004..2173065 (-)	1062	WP_126436008.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16425.86 Da
• Isoelectric Point: 9.3997

>NTDB_id=1117842 ELZ47_RS10775 WP_164549615.1 2168739..2169173(-) (comYD) [Streptococcus sanguinis strain NCTC 10904]
MENTVAKLKRLPIKAFTLLESLLVLFVVSFLLLGLSGSVRAGFNQVQEQLFFLEFERLYQETQRLSLASHEKLSLKLSGR
QISNGYQELDFPQTLQEHEQQVIQFDRAGGNSSLSKIIFQTEDRTVVYQLYMGNGKFKKTTASS

Nucleotide

• Length: 435 bp

>NTDB_id=1117842 ELZ47_RS10775 WP_164549615.1 2168739..2169173(-) (comYD) [Streptococcus sanguinis strain NCTC 10904]
ATGGAAAACACAGTGGCGAAACTCAAGCGGTTGCCAATTAAGGCTTTTACACTGCTGGAAAGTCTACTCGTTCTTTTTGT
TGTTAGTTTTCTACTACTAGGCTTATCTGGCTCGGTAAGGGCTGGCTTCAATCAGGTTCAAGAGCAACTCTTCTTTTTAG
AGTTTGAGAGACTCTATCAGGAGACGCAGAGGCTGAGCTTAGCCAGTCATGAGAAGCTTTCCCTGAAGCTTTCAGGACGG
CAGATTTCCAATGGCTATCAAGAGCTGGATTTTCCGCAAACTCTGCAGGAACATGAGCAGCAGGTTATCCAGTTTGACCG
GGCCGGTGGGAACTCATCGCTCAGCAAGATTATTTTTCAGACGGAGGACAGGACAGTTGTTTACCAACTTTATATGGGCA
ATGGCAAGTTTAAAAAGACGACAGCTTCAAGCTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	59.574	97.917	0.583
comGD/cglD	Streptococcus mitis NCTC 12261	59.848	91.667	0.549
comGD/cglD	Streptococcus pneumoniae Rx1	60.63	88.194	0.535
comGD/cglD	Streptococcus pneumoniae D39	60.63	88.194	0.535
comGD/cglD	Streptococcus pneumoniae R6	60.63	88.194	0.535
comGD/cglD	Streptococcus mitis SK321	60.63	88.194	0.535
comGD/cglD	Streptococcus pneumoniae TIGR4	59.843	88.194	0.528
comYD	Streptococcus mutans UA140	49.612	89.583	0.444
comYD	Streptococcus mutans UA159	49.612	89.583	0.444
comGD	Lactococcus lactis subsp. cremoris KW2	41.985	90.972	0.382