Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ELZ47_RS10755 Genome accession   NZ_LR134002
Coordinates   2166639..2167604 (-) Length   321 a.a.
NCBI ID   WP_126436000.1    Uniprot ID   A0AAJ5TBF6
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2161639..2172604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS10735 (NCTC10904_02110) folP 2162612..2163565 (-) 954 WP_126435996.1 dihydropteroate synthase -
  ELZ47_RS10740 (NCTC10904_02111) - 2163760..2164398 (-) 639 WP_126435997.1 CAAX protease family protein -
  ELZ47_RS10745 (NCTC10904_02112) - 2164516..2165265 (-) 750 WP_164549614.1 CPBP family intramembrane glutamic endopeptidase -
  ELZ47_RS10750 (NCTC10904_02113) - 2165409..2166602 (-) 1194 WP_126435999.1 acetate kinase -
  ELZ47_RS10755 (NCTC10904_02114) comYH 2166639..2167604 (-) 966 WP_126436000.1 class I SAM-dependent methyltransferase Machinery gene
  ELZ47_RS10760 (NCTC10904_02115) comGG 2167686..2168078 (-) 393 WP_126436001.1 competence type IV pilus minor pilin ComGG -
  ELZ47_RS10765 (NCTC10904_02116) comGF/cglF 2168059..2168496 (-) 438 WP_126436002.1 competence type IV pilus minor pilin ComGF Machinery gene
  ELZ47_RS10770 (NCTC10904_02117) comGE/cglE 2168480..2168773 (-) 294 WP_126436003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ELZ47_RS10775 (NCTC10904_02118) comYD 2168739..2169173 (-) 435 WP_164549615.1 competence type IV pilus minor pilin ComGD Machinery gene
  ELZ47_RS10780 (NCTC10904_02119) comYC 2169133..2169450 (-) 318 WP_002896769.1 competence type IV pilus major pilin ComGC Machinery gene
  ELZ47_RS10785 (NCTC10904_02120) comYB 2169450..2170484 (-) 1035 WP_269460457.1 competence type IV pilus assembly protein ComGB Machinery gene
  ELZ47_RS10790 (NCTC10904_02121) comYA 2170414..2171355 (-) 942 WP_126436006.1 competence type IV pilus ATPase ComGA Machinery gene
  ELZ47_RS10795 (NCTC10904_02122) - 2171485..2171865 (-) 381 WP_126436007.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 36727.66 Da        Isoelectric Point: 4.6183

>NTDB_id=1117839 ELZ47_RS10755 WP_126436000.1 2166639..2167604(-) (comYH) [Streptococcus sanguinis strain NCTC 10904]
MNFEKIEQAYTLILENVQNIQNALATNFYDALIEQNGIYLDGDTDLQEVLTNDEKIRSLHLNKEEWRRAYQFILMKAAQT
EPMQVNHQFTPDTIGFLITFLLDQLAHGEEADVLEIGSGTGSLAETILNHTQKKIDYLGLELDDLLIDLSASIAEVMNSK
AHFAQGDAVRPQFLKESDIIISDLPVGYYPDDSIASRYEVASTDEHTYAHHLLMEQSLKYLKPGGYAIFLAPNDLLTSAQ
APLLKKWLLAKAQFIAMITLPESIFSSSKHAKTLFVLRKQEANNIQPFIYPLRDLQDHDEMFKFRQSFQNWYKDSEIQTK
F

Nucleotide


Download         Length: 966 bp        

>NTDB_id=1117839 ELZ47_RS10755 WP_126436000.1 2166639..2167604(-) (comYH) [Streptococcus sanguinis strain NCTC 10904]
ATGAATTTTGAAAAGATAGAACAAGCTTATACTCTGATTCTCGAAAACGTCCAGAATATCCAAAACGCTCTGGCGACCAA
TTTTTATGATGCTCTGATTGAGCAGAACGGCATTTACCTAGATGGAGATACGGACTTACAAGAGGTTCTGACCAACGATG
AAAAAATCCGCTCTCTGCATTTGAACAAGGAAGAGTGGCGGAGAGCCTATCAGTTTATCCTGATGAAGGCGGCCCAGACG
GAGCCCATGCAGGTCAATCATCAGTTCACTCCTGATACAATTGGTTTTCTGATTACTTTCTTATTGGACCAGCTAGCTCA
CGGAGAGGAAGCTGATGTATTAGAAATCGGCAGCGGAACAGGAAGTTTGGCGGAGACCATTCTCAACCATACCCAAAAGA
AGATAGACTACTTAGGTCTGGAGTTGGATGACTTGTTAATCGATCTTTCAGCCAGCATTGCGGAGGTTATGAACTCTAAG
GCTCACTTTGCTCAGGGGGATGCAGTTCGGCCTCAGTTTCTGAAAGAGAGTGATATCATTATCAGTGATTTACCGGTCGG
TTATTATCCAGACGACAGTATCGCCTCTCGCTATGAAGTAGCGAGTACAGATGAGCACACTTATGCCCATCATCTCCTGA
TGGAGCAATCGCTCAAATATCTGAAGCCAGGTGGTTATGCTATATTTCTGGCGCCAAATGACCTCTTGACCAGCGCTCAA
GCTCCTCTGCTGAAAAAATGGCTCCTAGCCAAGGCTCAGTTTATCGCGATGATAACCTTGCCAGAGTCTATTTTCTCAAG
CAGCAAGCATGCCAAAACTCTTTTTGTATTGAGGAAACAAGAAGCGAATAATATTCAGCCTTTTATCTATCCTCTGCGGG
ATTTGCAGGATCATGATGAAATGTTTAAATTCCGTCAAAGTTTTCAAAACTGGTACAAAGATAGTGAAATTCAAACAAAA
TTTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

58.413

98.131

0.573
  comYH Streptococcus mutans UA140

58.095

98.131

0.57

Multiple sequence alignment