Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   ELZ47_RS10640 Genome accession   NZ_LR134002
Coordinates   2149232..2149627 (-) Length   131 a.a.
NCBI ID   WP_126435981.1    Uniprot ID   A0AAJ5NIZ4
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2144232..2154627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS10620 (NCTC10904_02088) - 2144693..2145976 (-) 1284 WP_126435980.1 ABC transporter substrate-binding protein -
  ELZ47_RS10625 (NCTC10904_02089) - 2145973..2146656 (-) 684 WP_012130913.1 response regulator transcription factor -
  ELZ47_RS10630 (NCTC10904_02090) - 2146649..2147965 (-) 1317 WP_002898587.1 sensor histidine kinase -
  ELZ47_RS10635 (NCTC10904_02091) - 2147965..2148951 (-) 987 WP_072073287.1 substrate-binding domain-containing protein -
  ELZ47_RS10640 (NCTC10904_02092) ssbB/cilA 2149232..2149627 (-) 396 WP_126435981.1 single-stranded DNA-binding protein Machinery gene
  ELZ47_RS10645 (NCTC10904_02093) - 2149705..2150466 (-) 762 WP_002928958.1 SDR family NAD(P)-dependent oxidoreductase -
  ELZ47_RS10650 (NCTC10904_02094) ytpR 2150508..2151134 (-) 627 WP_126435982.1 YtpR family tRNA-binding protein -
  ELZ47_RS10655 (NCTC10904_02095) - 2151131..2151466 (-) 336 WP_126435983.1 thioredoxin family protein -
  ELZ47_RS10660 (NCTC10904_02096) - 2151463..2151750 (-) 288 WP_125342633.1 DUF4651 domain-containing protein -
  ELZ47_RS10665 (NCTC10904_02097) pepA 2151921..2152985 (+) 1065 WP_126435984.1 glutamyl aminopeptidase -
  ELZ47_RS10670 (NCTC10904_02098) - 2153105..2154589 (+) 1485 WP_126435985.1 DUF1846 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14739.63 Da        Isoelectric Point: 6.7246

>NTDB_id=1117837 ELZ47_RS10640 WP_126435981.1 2149232..2149627(-) (ssbB/cilA) [Streptococcus sanguinis strain NCTC 10904]
MYNKVIVIGRLTATPELHKTANEKSVARATVAVNRRYKSQSGEREADFVNVIVWGRLAETLASYASKGSLISLDGELRTR
RYEKEGATHYVTEVLCHSFQLLESRAQRALRENNSAADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1117837 ELZ47_RS10640 WP_126435981.1 2149232..2149627(-) (ssbB/cilA) [Streptococcus sanguinis strain NCTC 10904]
ATGTATAATAAAGTAATTGTAATCGGCCGGCTGACGGCTACGCCTGAACTGCACAAGACTGCGAATGAAAAATCTGTGGC
TCGTGCAACAGTCGCGGTTAATCGTCGTTATAAATCTCAGAGTGGTGAGCGTGAGGCGGATTTTGTAAATGTGATTGTCT
GGGGGCGTCTAGCTGAGACTTTAGCCAGCTATGCAAGTAAGGGCAGCTTGATTTCTCTGGATGGTGAGCTACGGACTCGT
CGCTATGAGAAGGAGGGGGCGACTCATTATGTGACAGAGGTGCTCTGTCATAGCTTCCAGCTTCTGGAAAGTCGGGCTCA
GCGTGCCCTGCGTGAAAATAATAGCGCAGCTGATTTGGCAGATTTGGTGTTGGAAGAAGAGGAACTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae Rx1

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae D39

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae TIGR4

81.679

100

0.817
  ssbB/cilA Streptococcus mitis SK321

80.916

100

0.809
  ssbB/cilA Streptococcus mitis NCTC 12261

80.153

100

0.802
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.261

84.733

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

42.373

90.076

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366

Multiple sequence alignment