Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E0E09_RS14330 | Genome accession | NZ_LR027869 |
| Coordinates | 2684312..2684740 (-) | Length | 142 a.a. |
| NCBI ID | WP_000934775.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus isolate BPH2869 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2651657..2693044 | 2684312..2684740 | within | 0 |
Gene organization within MGE regions
Location: 2651657..2693044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0E09_RS14100 | - | 2651657..2653102 (-) | 1446 | WP_001148138.1 | SH3 domain-containing protein | - |
| E0E09_RS14105 | - | 2653083..2653520 (-) | 438 | WP_000354132.1 | phage holin | - |
| E0E09_RS14110 | - | 2653576..2653971 (-) | 396 | WP_000677972.1 | hypothetical protein | - |
| E0E09_RS14115 | - | 2653977..2655149 (-) | 1173 | WP_000276669.1 | BppU family phage baseplate upper protein | - |
| E0E09_RS14120 | - | 2655162..2657036 (-) | 1875 | WP_000524037.1 | glucosaminidase domain-containing protein | - |
| E0E09_RS14125 | - | 2657173..2657472 (-) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| E0E09_RS14130 | - | 2657513..2657686 (-) | 174 | WP_001790193.1 | XkdX family protein | - |
| E0E09_RS14135 | - | 2657690..2658067 (-) | 378 | WP_000705893.1 | DUF2977 domain-containing protein | - |
| E0E09_RS14140 | - | 2658067..2659890 (-) | 1824 | WP_000634520.1 | phage baseplate upper protein | - |
| E0E09_RS14145 | - | 2659890..2661788 (-) | 1899 | WP_000323259.1 | hypothetical protein | - |
| E0E09_RS14150 | - | 2661801..2663687 (-) | 1887 | WP_001144703.1 | SGNH/GDSL hydrolase family protein | - |
| E0E09_RS14155 | - | 2663698..2664633 (-) | 936 | WP_000560193.1 | phage tail domain-containing protein | - |
| E0E09_RS14160 | - | 2664648..2667617 (-) | 2970 | WP_000414232.1 | phage tail protein | - |
| E0E09_RS14165 | - | 2667620..2667961 (-) | 342 | WP_000204080.1 | hypothetical protein | - |
| E0E09_RS14170 | - | 2667982..2668476 (-) | 495 | WP_000141081.1 | tail assembly chaperone | - |
| E0E09_RS14175 | - | 2668538..2669098 (-) | 561 | WP_000046067.1 | hypothetical protein | - |
| E0E09_RS14180 | - | 2669085..2669522 (-) | 438 | WP_000270196.1 | DUF3168 domain-containing protein | - |
| E0E09_RS14185 | - | 2669535..2669948 (-) | 414 | WP_001151331.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| E0E09_RS14190 | - | 2669935..2670270 (-) | 336 | WP_000482985.1 | phage head closure protein | - |
| E0E09_RS14195 | - | 2670263..2670577 (-) | 315 | WP_000991902.1 | phage head-tail connector protein | - |
| E0E09_RS14200 | - | 2670577..2670903 (-) | 327 | WP_000278798.1 | Rho termination factor N-terminal domain-containing protein | - |
| E0E09_RS14205 | - | 2670920..2671744 (-) | 825 | WP_001135557.1 | N4-gp56 family major capsid protein | - |
| E0E09_RS14210 | - | 2671765..2672361 (-) | 597 | WP_000366933.1 | phage scaffolding protein | - |
| E0E09_RS14215 | - | 2672459..2673439 (-) | 981 | WP_049772008.1 | phage head morphogenesis protein | - |
| E0E09_RS14220 | - | 2673378..2674796 (-) | 1419 | WP_001791145.1 | phage portal protein | - |
| E0E09_RS14225 | - | 2674810..2676018 (-) | 1209 | WP_001791146.1 | PBSX family phage terminase large subunit | - |
| E0E09_RS14230 | - | 2676011..2676505 (-) | 495 | WP_000594083.1 | terminase small subunit | - |
| E0E09_RS14235 | - | 2676859..2677260 (-) | 402 | WP_000286968.1 | hypothetical protein | - |
| E0E09_RS14240 | rinB | 2677261..2677434 (-) | 174 | WP_000595256.1 | transcriptional activator RinB | - |
| E0E09_RS14245 | - | 2677431..2677637 (-) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| E0E09_RS14250 | - | 2677634..2677879 (-) | 246 | WP_001282077.1 | hypothetical protein | - |
| E0E09_RS14255 | - | 2677916..2678452 (-) | 537 | WP_000185680.1 | dUTPase | - |
| E0E09_RS14260 | - | 2678457..2678693 (-) | 237 | WP_001065023.1 | DUF1024 family protein | - |
| E0E09_RS14265 | - | 2678686..2678970 (-) | 285 | WP_001105618.1 | hypothetical protein | - |
| E0E09_RS14270 | - | 2678967..2679368 (-) | 402 | WP_000695766.1 | hypothetical protein | - |
| E0E09_RS14275 | - | 2679381..2679623 (-) | 243 | WP_000228426.1 | phi PVL orf 51-like protein | - |
| E0E09_RS16180 | - | 2679627..2680240 (-) | 614 | Protein_2647 | SA1788 family PVL leukocidin-associated protein | - |
| E0E09_RS14290 | - | 2680241..2680426 (-) | 186 | WP_001187254.1 | DUF3113 family protein | - |
| E0E09_RS14295 | - | 2680431..2680835 (-) | 405 | WP_000049777.1 | DUF1064 domain-containing protein | - |
| E0E09_RS14300 | - | 2680845..2681066 (-) | 222 | WP_001123680.1 | DUF3269 family protein | - |
| E0E09_RS14305 | - | 2681070..2681285 (-) | 216 | WP_001024405.1 | hypothetical protein | - |
| E0E09_RS14310 | - | 2681282..2682523 (-) | 1242 | WP_001106166.1 | DnaB helicase C-terminal domain-containing protein | - |
| E0E09_RS14315 | - | 2682520..2682876 (-) | 357 | WP_001132243.1 | hypothetical protein | - |
| E0E09_RS14320 | - | 2682876..2683631 (-) | 756 | WP_001037657.1 | DnaD domain protein | - |
| E0E09_RS14325 | - | 2683624..2684298 (-) | 675 | WP_001121810.1 | putative HNHc nuclease | - |
| E0E09_RS14330 | ssbA | 2684312..2684740 (-) | 429 | WP_000934775.1 | single-stranded DNA-binding protein | Machinery gene |
| E0E09_RS14335 | - | 2684740..2685393 (-) | 654 | WP_000840497.1 | ERF family protein | - |
| E0E09_RS14340 | - | 2685394..2685930 (-) | 537 | WP_001004335.1 | host-nuclease inhibitor Gam family protein | - |
| E0E09_RS14345 | - | 2685943..2686203 (-) | 261 | WP_000291101.1 | DUF1108 family protein | - |
| E0E09_RS14350 | - | 2686300..2686461 (-) | 162 | WP_000048124.1 | DUF1270 family protein | - |
| E0E09_RS14355 | - | 2686454..2686675 (-) | 222 | WP_000977378.1 | hypothetical protein | - |
| E0E09_RS14360 | - | 2686747..2687412 (+) | 666 | WP_001791098.1 | hypothetical protein | - |
| E0E09_RS16135 | - | 2687433..2687501 (-) | 69 | Protein_2663 | hypothetical protein | - |
| E0E09_RS14365 | - | 2687526..2688269 (-) | 744 | WP_130826634.1 | phage antirepressor KilAC domain-containing protein | - |
| E0E09_RS14370 | - | 2688329..2688811 (+) | 483 | WP_000394410.1 | hypothetical protein | - |
| E0E09_RS14375 | - | 2688912..2689091 (-) | 180 | WP_000438352.1 | hypothetical protein | - |
| E0E09_RS14380 | - | 2689106..2689549 (-) | 444 | WP_033847068.1 | hypothetical protein | - |
| E0E09_RS14385 | - | 2689567..2689791 (-) | 225 | WP_031902131.1 | DUF739 family protein | - |
| E0E09_RS14390 | - | 2689950..2690720 (+) | 771 | WP_031902132.1 | S24 family peptidase | - |
| E0E09_RS14395 | - | 2690790..2690957 (+) | 168 | WP_000705238.1 | hypothetical protein | - |
| E0E09_RS14400 | - | 2691097..2691801 (+) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E0E09_RS14405 | - | 2691998..2693044 (+) | 1047 | WP_001145732.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15934.61 Da Isoelectric Point: 8.4724
>NTDB_id=1115808 E0E09_RS14330 WP_000934775.1 2684312..2684740(-) (ssbA) [Staphylococcus aureus isolate BPH2869]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKDGKRVFVTEVVADNVQFLEPKNNNQQPSNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKDGKRVFVTEVVADNVQFLEPKNNNQQPSNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=1115808 E0E09_RS14330 WP_000934775.1 2684312..2684740(-) (ssbA) [Staphylococcus aureus isolate BPH2869]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAATTACCTTTCTAAAGGATCACTGGCAGGTGTAGACGGACGATTACAAACACGT
AGCTACGATAACAAAGACGGGAAACGTGTATTTGTTACAGAAGTAGTAGCGGACAATGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAGCAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAATTACCTTTCTAAAGGATCACTGGCAGGTGTAGACGGACGATTACAAACACGT
AGCTACGATAACAAAGACGGGAAACGTGTATTTGTTACAGAAGTAGTAGCGGACAATGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAGCAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.558 |
100 |
0.697 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.259 |
100 |
0.415 |
| ssbA | Streptococcus mutans UA159 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.732 |
100 |
0.387 |
| ssb | Glaesserella parasuis strain SC1401 |
29.282 |
100 |
0.373 |