Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E0E09_RS10600 Genome accession   NZ_LR027869
Coordinates   2033594..2034022 (-) Length   142 a.a.
NCBI ID   WP_000934775.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate BPH2869     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1997846..2043239 2033594..2034022 within 0


Gene organization within MGE regions


Location: 1997846..2043239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E09_RS10325 - 1997846..1998361 (-) 516 WP_000163283.1 type 1 glutamine amidotransferase domain-containing protein -
  E0E09_RS10330 - 1998492..1998653 (-) 162 WP_001005408.1 SE1561 family protein -
  E0E09_RS10335 - 1999000..1999080 (+) 81 WP_100250272.1 hypothetical protein -
  E0E09_RS10350 - 1999667..2001112 (-) 1446 WP_001148138.1 SH3 domain-containing protein -
  E0E09_RS10355 - 2001093..2001530 (-) 438 WP_000354132.1 phage holin -
  E0E09_RS10360 - 2001586..2001981 (-) 396 WP_000398878.1 hypothetical protein -
  E0E09_RS10365 - 2001987..2003159 (-) 1173 WP_130826618.1 BppU family phage baseplate upper protein -
  E0E09_RS10370 - 2003172..2005070 (-) 1899 WP_130826619.1 glucosaminidase domain-containing protein -
  E0E09_RS10375 - 2005207..2005506 (-) 300 WP_000466769.1 DUF2951 domain-containing protein -
  E0E09_RS10380 - 2005547..2005720 (-) 174 WP_001790193.1 XkdX family protein -
  E0E09_RS10385 - 2005724..2006101 (-) 378 WP_000705893.1 DUF2977 domain-containing protein -
  E0E09_RS10390 - 2006101..2007924 (-) 1824 WP_000634520.1 phage baseplate upper protein -
  E0E09_RS10395 - 2007924..2009834 (-) 1911 WP_130826620.1 hypothetical protein -
  E0E09_RS10400 - 2009849..2011750 (-) 1902 WP_000156406.1 SGNH/GDSL hydrolase family protein -
  E0E09_RS10405 - 2011759..2012706 (-) 948 WP_000350680.1 phage tail family protein -
  E0E09_RS10410 - 2012719..2016183 (-) 3465 WP_130826621.1 hypothetical protein -
  E0E09_RS10415 - 2016200..2016544 (-) 345 WP_000105584.1 hypothetical protein -
  E0E09_RS10420 - 2016574..2016939 (-) 366 WP_001100161.1 tail assembly chaperone -
  E0E09_RS10425 - 2017001..2017582 (-) 582 WP_000002577.1 phage major tail protein, TP901-1 family -
  E0E09_RS10430 - 2017601..2017984 (-) 384 WP_000188651.1 hypothetical protein -
  E0E09_RS10435 - 2017996..2018343 (-) 348 WP_001017815.1 HK97-gp10 family putative phage morphogenesis protein -
  E0E09_RS10440 - 2018343..2018645 (-) 303 WP_001268312.1 hypothetical protein -
  E0E09_RS10445 - 2018642..2018974 (-) 333 WP_000208960.1 phage head-tail connector protein -
  E0E09_RS10450 - 2018983..2019270 (-) 288 WP_001114086.1 hypothetical protein -
  E0E09_RS10455 - 2019292..2020266 (-) 975 WP_000438511.1 phage major capsid protein -
  E0E09_RS10460 - 2020280..2020900 (-) 621 WP_000392151.1 DUF4355 domain-containing protein -
  E0E09_RS16065 - 2020894..2020981 (-) 88 Protein_1927 hypothetical protein -
  E0E09_RS10465 - 2021009..2021179 (-) 171 WP_000072208.1 hypothetical protein -
  E0E09_RS10470 - 2021252..2022247 (-) 996 WP_025176340.1 minor capsid protein -
  E0E09_RS10475 - 2022254..2023789 (-) 1536 WP_000921888.1 phage portal protein -
  E0E09_RS10480 - 2023800..2025077 (-) 1278 WP_000169946.1 PBSX family phage terminase large subunit -
  E0E09_RS10485 - 2025064..2025504 (-) 441 WP_001566315.1 terminase small subunit -
  E0E09_RS10490 - 2025691..2026110 (-) 420 WP_000058632.1 transcriptional regulator -
  E0E09_RS10495 - 2026125..2026271 (-) 147 WP_000990007.1 hypothetical protein -
  E0E09_RS10500 rinB 2026272..2026445 (-) 174 WP_025174872.1 transcriptional activator RinB -
  E0E09_RS10505 - 2026448..2026648 (-) 201 WP_001125015.1 hypothetical protein -
  E0E09_RS10510 - 2026623..2026811 (-) 189 WP_000195817.1 DUF1381 domain-containing protein -
  E0E09_RS10515 - 2026828..2027001 (-) 174 WP_001209216.1 hypothetical protein -
  E0E09_RS10520 - 2027038..2027571 (-) 534 WP_015984502.1 dUTP diphosphatase -
  E0E09_RS10525 - 2027564..2027734 (-) 171 WP_000714412.1 hypothetical protein -
  E0E09_RS10530 - 2027721..2027975 (-) 255 WP_001647735.1 DUF1024 family protein -
  E0E09_RS10535 - 2027968..2028252 (-) 285 WP_001105618.1 hypothetical protein -
  E0E09_RS10540 - 2028249..2028650 (-) 402 WP_000695766.1 hypothetical protein -
  E0E09_RS10545 - 2028663..2028905 (-) 243 WP_000228426.1 phi PVL orf 51-like protein -
  E0E09_RS16170 - 2028909..2029522 (-) 614 Protein_1945 SA1788 family PVL leukocidin-associated protein -
  E0E09_RS10560 - 2029523..2029708 (-) 186 WP_001187254.1 DUF3113 family protein -
  E0E09_RS10565 - 2029713..2030117 (-) 405 WP_000049777.1 DUF1064 domain-containing protein -
  E0E09_RS10570 - 2030127..2030348 (-) 222 WP_001123680.1 DUF3269 family protein -
  E0E09_RS10575 - 2030352..2030567 (-) 216 WP_001024405.1 hypothetical protein -
  E0E09_RS10580 - 2030564..2031805 (-) 1242 WP_001106166.1 DnaB helicase C-terminal domain-containing protein -
  E0E09_RS10585 - 2031802..2032158 (-) 357 WP_001132243.1 hypothetical protein -
  E0E09_RS10590 - 2032158..2032913 (-) 756 WP_001037657.1 DnaD domain protein -
  E0E09_RS10595 - 2032906..2033580 (-) 675 WP_001121810.1 putative HNHc nuclease -
  E0E09_RS10600 ssbA 2033594..2034022 (-) 429 WP_000934775.1 single-stranded DNA-binding protein Machinery gene
  E0E09_RS10605 - 2034022..2034675 (-) 654 WP_000840497.1 ERF family protein -
  E0E09_RS10610 - 2034676..2035212 (-) 537 WP_001004335.1 host-nuclease inhibitor Gam family protein -
  E0E09_RS10615 - 2035225..2035485 (-) 261 WP_000291101.1 DUF1108 family protein -
  E0E09_RS10620 - 2035582..2035743 (-) 162 WP_000048124.1 DUF1270 family protein -
  E0E09_RS10625 - 2035736..2035957 (-) 222 WP_000977378.1 hypothetical protein -
  E0E09_RS10630 - 2036029..2036694 (+) 666 WP_001791098.1 hypothetical protein -
  E0E09_RS16080 - 2036715..2036783 (-) 69 Protein_1961 hypothetical protein -
  E0E09_RS10635 tscA 2036823..2037047 (-) 225 WP_000187184.1 type II toxin-antitoxin system antitoxin TscA -
  E0E09_RS10640 - 2037048..2037839 (-) 792 WP_001148563.1 phage antirepressor -
  E0E09_RS10645 - 2037855..2038073 (-) 219 WP_001198673.1 helix-turn-helix transcriptional regulator -
  E0E09_RS10650 - 2038215..2038934 (+) 720 WP_000358224.1 XRE family transcriptional regulator -
  E0E09_RS10655 - 2039004..2039171 (+) 168 WP_000705238.1 hypothetical protein -
  E0E09_RS16085 - 2039311..2039487 (+) 177 WP_225904538.1 hypothetical protein -
  E0E09_RS10660 - 2039489..2040016 (+) 528 WP_232044631.1 type II toxin-antitoxin system PemK/MazF family toxin -
  E0E09_RS10665 - 2040213..2041259 (+) 1047 WP_001145732.1 tyrosine-type recombinase/integrase -
  E0E09_RS10670 yfkAB 2041304..2042449 (+) 1146 WP_001245448.1 radical SAM/CxCxxxxC motif protein YfkAB -
  E0E09_RS10675 - 2042709..2043239 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15934.61 Da        Isoelectric Point: 8.4724

>NTDB_id=1115800 E0E09_RS10600 WP_000934775.1 2033594..2034022(-) (ssbA) [Staphylococcus aureus isolate BPH2869]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKDGKRVFVTEVVADNVQFLEPKNNNQQPSNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1115800 E0E09_RS10600 WP_000934775.1 2033594..2034022(-) (ssbA) [Staphylococcus aureus isolate BPH2869]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAATTACCTTTCTAAAGGATCACTGGCAGGTGTAGACGGACGATTACAAACACGT
AGCTACGATAACAAAGACGGGAAACGTGTATTTGTTACAGAAGTAGTAGCGGACAATGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAGCAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.697
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.259

100

0.415
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae Rx1

38.732

100

0.387
  ssbB/cilA Streptococcus pneumoniae D39

38.732

100

0.387
  ssbB/cilA Streptococcus pneumoniae R6

38.732

100

0.387
  ssbB/cilA Streptococcus mitis SK321

38.732

100

0.387
  ssb Glaesserella parasuis strain SC1401

29.282

100

0.373

Multiple sequence alignment