Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BN2297_RS26320 | Genome accession | NZ_LN879547 |
| Coordinates | 5056049..5056483 (-) | Length | 144 a.a. |
| NCBI ID | WP_081034056.1 | Uniprot ID | - |
| Organism | Comamonas thiooxydans isolate C19 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5051049..5061483
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BN2297_RS22960 | - | 5051145..5051618 (+) | 474 | WP_057094113.1 | hypothetical protein | - |
| BN2297_RS22965 | - | 5051727..5052077 (+) | 351 | WP_034348032.1 | phage holin family protein | - |
| BN2297_RS22970 | - | 5052036..5053667 (-) | 1632 | WP_057094836.1 | M48 family metalloprotease | - |
| BN2297_RS22975 | moaC | 5053868..5054338 (+) | 471 | WP_057094115.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| BN2297_RS26315 | - | 5054332..5056041 (-) | 1710 | WP_081034055.1 | O-antigen ligase family protein | - |
| BN2297_RS26320 | pilA | 5056049..5056483 (-) | 435 | WP_081034056.1 | pilin | Machinery gene |
| BN2297_RS22985 | - | 5056672..5057391 (-) | 720 | WP_057094118.1 | FHA domain-containing protein | - |
| BN2297_RS22990 | ssb | 5057708..5058256 (-) | 549 | WP_003064700.1 | single-stranded DNA-binding protein | Machinery gene |
| BN2297_RS22995 | - | 5058517..5059689 (-) | 1173 | WP_057094837.1 | MFS transporter | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14495.70 Da Isoelectric Point: 9.5825
>NTDB_id=1115020 BN2297_RS26320 WP_081034056.1 5056049..5056483(-) (pilA) [Comamonas thiooxydans isolate C19]
MKRSIQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRARVSEALVLASSAKTAVTENAATGKDLAAGIGSISATSNVAS
MTVASNTGVISVVTSSAAKSISLALTPTAGGSGLTSGTVPEGNISWKCSISDSTKAKYVPSECR
MKRSIQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRARVSEALVLASSAKTAVTENAATGKDLAAGIGSISATSNVAS
MTVASNTGVISVVTSSAAKSISLALTPTAGGSGLTSGTVPEGNISWKCSISDSTKAKYVPSECR
Nucleotide
Download Length: 435 bp
>NTDB_id=1115020 BN2297_RS26320 WP_081034056.1 5056049..5056483(-) (pilA) [Comamonas thiooxydans isolate C19]
ATGAAGCGTTCCATTCAAAAGGGTTTCACCTTGATCGAACTGATGATCGTTGTCGCGATCATCGGTATTTTGGCTGCTGT
GGCTCTGCCTGCTTATCAGGATTACACAGTGCGTGCACGTGTTTCTGAAGCTCTGGTGTTGGCGTCTAGTGCTAAGACTG
CTGTGACGGAAAATGCCGCTACGGGTAAAGATCTCGCTGCTGGAATTGGATCCATTTCTGCAACTAGTAATGTGGCTAGT
ATGACTGTCGCTTCTAATACTGGCGTTATTTCAGTTGTTACATCTTCGGCTGCCAAAAGCATCTCTTTGGCCCTGACTCC
TACTGCCGGAGGATCTGGCCTTACTTCTGGCACAGTTCCTGAAGGAAATATCAGCTGGAAATGCAGCATTTCTGACTCCA
CCAAGGCTAAGTACGTACCTTCTGAGTGCCGCTAA
ATGAAGCGTTCCATTCAAAAGGGTTTCACCTTGATCGAACTGATGATCGTTGTCGCGATCATCGGTATTTTGGCTGCTGT
GGCTCTGCCTGCTTATCAGGATTACACAGTGCGTGCACGTGTTTCTGAAGCTCTGGTGTTGGCGTCTAGTGCTAAGACTG
CTGTGACGGAAAATGCCGCTACGGGTAAAGATCTCGCTGCTGGAATTGGATCCATTTCTGCAACTAGTAATGTGGCTAGT
ATGACTGTCGCTTCTAATACTGGCGTTATTTCAGTTGTTACATCTTCGGCTGCCAAAAGCATCTCTTTGGCCCTGACTCC
TACTGCCGGAGGATCTGGCCTTACTTCTGGCACAGTTCCTGAAGGAAATATCAGCTGGAAATGCAGCATTTCTGACTCCA
CCAAGGCTAAGTACGTACCTTCTGAGTGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
48.765 |
100 |
0.549 |
| comP | Acinetobacter baylyi ADP1 |
48.387 |
100 |
0.521 |
| pilA2 | Legionella pneumophila str. Paris |
50.694 |
100 |
0.507 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
50 |
100 |
0.5 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
38.69 |
100 |
0.451 |
| pilE | Neisseria gonorrhoeae MS11 |
38.75 |
100 |
0.431 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.961 |
100 |
0.417 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.585 |
100 |
0.417 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.776 |
100 |
0.396 |
| pilA | Pseudomonas aeruginosa PAK |
38.776 |
100 |
0.396 |