Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BN2297_RS22990 Genome accession   NZ_LN879547
Coordinates   5057708..5058256 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas thiooxydans isolate C19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5052708..5063256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN2297_RS22975 moaC 5053868..5054338 (+) 471 WP_057094115.1 cyclic pyranopterin monophosphate synthase MoaC -
  BN2297_RS26315 - 5054332..5056041 (-) 1710 WP_081034055.1 O-antigen ligase family protein -
  BN2297_RS26320 pilA 5056049..5056483 (-) 435 WP_081034056.1 pilin Machinery gene
  BN2297_RS22985 - 5056672..5057391 (-) 720 WP_057094118.1 FHA domain-containing protein -
  BN2297_RS22990 ssb 5057708..5058256 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  BN2297_RS22995 - 5058517..5059689 (-) 1173 WP_057094837.1 MFS transporter -
  BN2297_RS23000 uvrA 5059916..5062984 (+) 3069 WP_057094119.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=1115015 BN2297_RS22990 WP_003064700.1 5057708..5058256(-) (ssb) [Comamonas thiooxydans isolate C19]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1115015 BN2297_RS22990 WP_003064700.1 5057708..5058256(-) (ssb) [Comamonas thiooxydans isolate C19]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACTGGAGAAAACCGCGAAGCCACCGAATGGC
ACCGTGTGGTCTTCAACGGCAAACTGGCCGAAATCGTGGGCCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGCGGTGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCTCCCCAGCGCGCAGCTTCGGGGTTTGACGACATGGATGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451

Multiple sequence alignment