Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   VANGNB10_RS08260 Genome accession   NZ_LK021130
Coordinates   558059..558484 (-) Length   141 a.a.
NCBI ID   WP_040122945.1    Uniprot ID   A0AAW4AAV7
Organism   Vibrio anguillarum strain NB10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553059..563484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VANGNB10_RS08240 (TVA2086) coaE 553573..554181 (-) 609 WP_013857688.1 dephospho-CoA kinase -
  VANGNB10_RS08245 (TVA2085) pilD 554172..555053 (-) 882 WP_013857687.1 prepilin peptidase Machinery gene
  VANGNB10_RS08250 (TVA2084) pilC 555092..556318 (-) 1227 WP_013857686.1 type II secretion system F family protein Machinery gene
  VANGNB10_RS08255 (TVA2083) pilB 556361..558049 (-) 1689 WP_029189846.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VANGNB10_RS08260 (TVA2082) pilA 558059..558484 (-) 426 WP_040122945.1 pilin Machinery gene
  VANGNB10_RS08265 (TVA2081) nadC 558743..559630 (-) 888 WP_013857682.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VANGNB10_RS08270 (TVA2080) ampD 559755..560306 (+) 552 WP_202599069.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VANGNB10_RS08275 (TVA2079) fldB 560328..560846 (-) 519 WP_013857680.1 flavodoxin FldB -
  VANGNB10_RS08280 (TVA2078) xerD 560999..561907 (+) 909 WP_013857679.1 site-specific tyrosine recombinase XerD -
  VANGNB10_RS08285 (TVA2077) - 561921..562694 (+) 774 WP_013857678.1 thioredoxin fold domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14584.80 Da        Isoelectric Point: 9.4689

>NTDB_id=1113430 VANGNB10_RS08260 WP_040122945.1 558059..558484(-) (pilA) [Vibrio anguillarum strain NB10]
MNTNKKTKQSGFTLIELMIVVAIVGVLAAIAVPQYQKYVAKSEAAAALASITGHRTNVETYVLTQGSFPSTSAALAIPTS
PLGIITYDNASSAAGDILFTFNGTGVSPDMVSKKVAVKRNASGAWSCSTDVALELKPKGCS

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1113430 VANGNB10_RS08260 WP_040122945.1 558059..558484(-) (pilA) [Vibrio anguillarum strain NB10]
ATGAACACAAATAAGAAAACGAAACAAAGTGGTTTTACCTTAATTGAATTGATGATTGTAGTAGCTATAGTCGGTGTTCT
AGCCGCAATTGCAGTTCCGCAATATCAAAAATATGTGGCAAAAAGTGAGGCTGCAGCAGCTTTAGCTTCAATTACGGGCC
ACAGAACAAACGTCGAAACATACGTGCTAACCCAAGGTAGCTTCCCTAGCACATCAGCAGCTCTTGCTATTCCAACATCC
CCTCTTGGTATCATAACTTATGATAATGCCTCATCGGCAGCAGGGGACATTTTATTCACCTTCAATGGCACAGGTGTTAG
CCCAGACATGGTAAGTAAAAAAGTTGCTGTGAAAAGAAATGCTAGTGGTGCATGGAGTTGCAGTACTGATGTGGCATTAG
AGTTAAAACCAAAAGGTTGTAGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Pilin (bacterial filament) (Pilin)

(40-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio cholerae strain A1552

48.344

100

0.518
  pilA Vibrio cholerae C6706

48.344

100

0.518
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

48.344

100

0.518
  pilA Pseudomonas aeruginosa PAK

41.096

100

0.426
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.429

99.291

0.411
  pilA Acinetobacter baumannii strain A118

40.58

97.872

0.397
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.589

100

0.376
  pilA Vibrio parahaemolyticus RIMD 2210633

37.063

100

0.376
  pilA Acinetobacter nosocomialis M2

35.664

100

0.362

Multiple sequence alignment